Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02690 ATGGCCATCGCAACAGAGACTCAGCCTCAACAACACAAGGATTCTTTCGAGGTGTCGTCGGGTTCAGCTGCGGAGAGGAGGTGGACGCTGAACGATTTCGAGGTTGGAAAGCCTCTTGGAAGGGGGAAATTCGGCCACGTCTATTTGGCAAGAGAGAAGAGTAGTAATCATATTGTTGCTTTGAAAGTACTCTTTAAGAGCCAATTGCAGCAATCCCAAGTTGTGCATCAACTTCGGCGAGAAGTTGAGATTCAAAGTCATCTCCGACATCCCCACATCTTGCGCCTCTATGGATACTTTTATGACCAGAAAAGAGTGTATTTGATTTTAGAGTATGCACCCAAAGGTGAACTTTACAAGGAATTGCAAAAATGCAAGTATTTCAGTGAAAGGCGTGCAGCTACTTATGTTGCGTCATTGGCTCGGGCCCTAATATATTGCCATGGAAAACACGTAATCCACAGGGATATTAAACCAGAAAACCTTCTTGTTGGTGCACAGGGTGAGCTAAAAATAGCGGACTTTGGGTGGTCAGTGCACACATTTAATCGCAGGCGGACAATGTGTGGCACACTGGATTACCTTCCTCCCGAGATGGTGGAGAGTGTAGAACATGATGCGAGTGTGGATATATGGAGCCTTGGTGTGCTGTGTTATGAGTTTCTTTATGGGGTCCCTCCCTTTGAGGCTAAAGAACACTCGGATACTTACAGGAGGATAGTACATGTGGATCTTAAGTTCCCTCCTAAACCAATTGTATCCTCTGGTGCAAAGGATCTTATCAGTCAGATGCTTGTCAAGGATTCCTCGCAACGGTTACCATTGCACAAACTCCTTGATCACCCTTGGATTGTTCAGAATGCAGAGCCTTCTGGTGTATATAGGGGCTAG 891 0.4579 MAIATETQPQQHKDSFEVSSGSAAERRWTLNDFEVGKPLGRGKFGHVYLAREKSSNHIVALKVLFKSQLQQSQVVHQLRREVEIQSHLRHPHILRLYGYFYDQKRVYLILEYAPKGELYKELQKCKYFSERRAATYVASLARALIYCHGKHVIHRDIKPENLLVGAQGELKIADFGWSVHTFNRRRTMCGTLDYLPPEMVESVEHDASVDIWSLGVLCYEFLYGVPPFEAKEHSDTYRRIVHVDLKFPPKPIVSSGAKDLISQMLVKDSSQRLPLHKLLDHPWIVQNAEPSGVYRG 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02690 296 Gene3D Phosphorylase Kinase; domain 1 21 116 - -
Vimu10g02690 296 MobiDBLite consensus disorder prediction 1 20 - -
Vimu10g02690 296 ProSiteProfiles Protein kinase domain profile. 33 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02690 296 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Vimu10g02690 296 Gene3D Transferase(Phosphotransferase) domain 1 117 292 - -
Vimu10g02690 296 ProSitePatterns Protein kinases ATP-binding region signature. 39 62 IPR017441 GO:0005524
Vimu10g02690 296 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 6 295 IPR030616 GO:0004672
Vimu10g02690 296 FunFam serine/threonine-protein kinase Aurora-1 117 292 - -
Vimu10g02690 296 CDD STKc_Aurora 32 285 - -
Vimu10g02690 296 SUPERFAMILY Protein kinase-like (PK-like) 21 288 IPR011009 -
Vimu10g02690 296 PIRSF ILK 4 281 - -
Vimu10g02690 296 FunFam Aurora kinase A 25 116 - -
Vimu10g02690 296 Pfam Protein kinase domain 33 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02690 296 SMART serkin_6 33 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02690 Vimu-Chr10 38348572 38351398 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02690 25 295 CBL-interacting serine-threonine protein kinases AT5G10930 35.612 6.14e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Vimu10g02690 Pkinase 8.5e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02690 K08850 - gmx:100775451 574.318