Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02671 ATGAACCACCATAATCCTTTCATCACCCTCTTCTCTACTATACTAATCGTTTCCACCACCACCCTGTCACTCTCCCAGGTTATCATCACCAGTAGCACCACCAAGAACCAGTCACAGTTTTTCTTTCTCATGAAACTCTCTCTCCCCGGGAAGTACCCCTTGAATTGGGACGCTGGAAAACCCGTCTGCAGCTTCACCGGAGTTACCTGCAACACCAAAGGTGACGTTATCGGCCTCGACCTTTCAGGTTGGTCATCACTTACTGGAAAGTTCCCGGCAGATACATGCTCTTACCTCCCACAGTTACGTGTTCTCCGCCTCGGCCACACCAGGTTCAAGTTCAACGTAGACACCATCCTCAACTGTTCCCACTTGGAAGAGCTTAACATGAACCACATGTCCCAGACCGGCACGCTCCCAGATTTTTCTTCCTTGAAATCTCTGAGGATTCTTGATTTGTCCTACAACGCCTTCACAGGCCAGTTCCCCATGTCAGTGTTCAACCTCACCAACCTCGAGCTGCTAAACTTCAATGAAAACCAAGGCTTCAACCTGTGGCAGTTACCTTCAGATATTGACAGGTTGAAACACCTCAAGTCCATGGTTCTCACGACGTGCATGGTGCATGGTCAAATCCCTGCGTCCATAGGGAACATAACTTCCCTCATCGATCTTGAGCTGAGTGGGAATTTCCTCACGGGACAAATTCCGAAAGAGCTTGGTCAGCTGAAGAACCTTCAACAGCTTGAGCTTTACTATAACTACCATCTCGTTGGGAACATCCCAGAGGAGCTGGGGAATCTCACGGAGCTCGTGGATTTGGATATGTCAGTGAACAAGTTTACCGGGAGCATCCCTGCGTCGGTTTGTAGGCTTCCCAAGCTTCAAGTCTTGCAGCTCTACAACAACAGCCTCACAGGTGAAATCCCAGGTGCGATTGAAAACTCAACAGCTTTAAGAATGCTGTCTCTGTACGACAACTTCCTTGTAGGACAGGTTCCCAAGAAACTGGGACAGTTCTCTGAAATGTTAGTTTTTGACTTGTCGGAGAATAAATTTTCTGGTCCGTTGCCAACCGAGGTTTGCAAGGGCGGTACGCTAGAGTACTTTCTCGTTCTGGATAACATGTTTTCTGGAGAGATACCACAGAGTTATGCGAACTGCATGATGCTGTTGAGGTTTAGAGTGAGTAACAACCGTTTGGAGGGTTCCATTCCCGCGGGACTCCTTGGTTTACCACACGTTTCAATCATTGATGTGAGTAACAATAACTTGAATGGTCCAATTCCTGAGATTAACGGGAATTCTAGAAACCTGTCTGAACTGTTCCTTCAGAGGAACAAAATTTCAGGTGTCATAACTCCCACAATATCTCGAGCCATTAGTCTGGTCAAAATAGATTTCAGTTACAACCTTCTATCTGGTCCAATCCCTTCCGAAATAGGCAACCTCAGAAGGCTCAATTTGCTTATGTTGCAAGGGAACAAGCTGAATTCTTCCATCCCTGGTTCACTTTCTTCATTGGAGTTTCTCAACCTTCTTGATCTCTCCAACAATCTTTTAACTGGGAGCATCCCTGAAAGCCTCTCTGTGCTGCTACCAAACTCTATTAACTTCTCGCACAATATGCTTTCGGGTCCAATTCCTCCCAAACTGATCAAAGGAGGCTTGGTGGAAAGTTTCGCAGGGAATCCTGGTTTGTGTGTGCTACCTGTGTATGCCAATTCATCGAATCGAAACTTCCCCATATGTCCAAGTGCCTACAAGAACAAGAGGATCAACACCATCTGGATAGCTGGGGTGTCAGTGGTTTTGATCTTTATTGGGTCTGCCTTGTTTCTCAAACGTAGGTGCAGCAAAGACAACGCTGCAGTGGAACATGAGGAGACACTGTCTTCATCGGTTTTCTCTTATGACGTTAAGAGCTTCCACAAGATCTCTTTCGACCAAAGGGAGATCGTTGAGTCCTTGGTGGACAAGAACATAATGGGGCATGGAGGGTCTGGGACAGTGTACAAGATTGAGTTGAAAAGTGGTGATATTGTCGCAGTGAAGAGGCTGTGGAGTCGCAAGTCCAAGGATTCGACTCCAGAGGATCGGTTGTTTGTGGACAAGGCATTGAAGGCAGAGGTGGAGACCTTAGGAAGCATAAGACACAAGAACATAGTGAAATTATACTGCTGCTTCTCCAGTTTCGACTGCAGCTTGTTGGTTTATGAGTACATGCCAAATGGTAATCTTTGGGATTCCCTGCACAAGGGTTGGACCCTTTTGGATTGGCCTACTCGTTATAGAATTGCACTGGGAATTGCACAGGGTTTATCATACCTTCACCATGATTTGCTTCTTCCTATTATCCATCGAGACATCAAGTCAACCAATATCCTGTTGGATGTTGATTACCAGCCCAGGGTTGCAGACTTTGGGATTGCCAAGGTTTTGCAAGCGAGAGGAGTGAAGGATTCCACGACAACTGTCATTGCAGGAACATATGGTTACTTAGCCCCAGAATTTGCATATTCATCAAGGGCCACCACCAAGTGCGACGTCTATAGTTTTGGGGTGATTTTGATGGAGCTGTTAACTGGGAAGAAGCCCGTGGAGGCAGAGTTTGGAGAGAACAGAAACATTGTTTTCTGGGTTTCCAACAAAGTAGAAGGAAAGGAGGGGGCAAGACCAAGTGAAGTTTTTGATCCGAGGTTATCATGTTCATTCAAGGATGACATGATCAAAGTGTTGCGGATTGCCATTCGCTGCACCTACAAAGCCCCAACAAGTAGACCAACCATGAAAGAGGTTGTTCAGCTTCTGATTGAGGCAGAGCCACGCGGTTCCGAGTCTTGCAAGTTGTCAACCAAAGATGTTACAAATGTCACCGTAGTAAAGAAACCATATGAATTATAA 2904 0.4621 MNHHNPFITLFSTILIVSTTTLSLSQVIITSSTTKNQSQFFFLMKLSLPGKYPLNWDAGKPVCSFTGVTCNTKGDVIGLDLSGWSSLTGKFPADTCSYLPQLRVLRLGHTRFKFNVDTILNCSHLEELNMNHMSQTGTLPDFSSLKSLRILDLSYNAFTGQFPMSVFNLTNLELLNFNENQGFNLWQLPSDIDRLKHLKSMVLTTCMVHGQIPASIGNITSLIDLELSGNFLTGQIPKELGQLKNLQQLELYYNYHLVGNIPEELGNLTELVDLDMSVNKFTGSIPASVCRLPKLQVLQLYNNSLTGEIPGAIENSTALRMLSLYDNFLVGQVPKKLGQFSEMLVFDLSENKFSGPLPTEVCKGGTLEYFLVLDNMFSGEIPQSYANCMMLLRFRVSNNRLEGSIPAGLLGLPHVSIIDVSNNNLNGPIPEINGNSRNLSELFLQRNKISGVITPTISRAISLVKIDFSYNLLSGPIPSEIGNLRRLNLLMLQGNKLNSSIPGSLSSLEFLNLLDLSNNLLTGSIPESLSVLLPNSINFSHNMLSGPIPPKLIKGGLVESFAGNPGLCVLPVYANSSNRNFPICPSAYKNKRINTIWIAGVSVVLIFIGSALFLKRRCSKDNAAVEHEETLSSSVFSYDVKSFHKISFDQREIVESLVDKNIMGHGGSGTVYKIELKSGDIVAVKRLWSRKSKDSTPEDRLFVDKALKAEVETLGSIRHKNIVKLYCCFSSFDCSLLVYEYMPNGNLWDSLHKGWTLLDWPTRYRIALGIAQGLSYLHHDLLLPIIHRDIKSTNILLDVDYQPRVADFGIAKVLQARGVKDSTTTVIAGTYGYLAPEFAYSSRATTKCDVYSFGVILMELLTGKKPVEAEFGENRNIVFWVSNKVEGKEGARPSEVFDPRLSCSFKDDMIKVLRIAIRCTYKAPTSRPTMKEVVQLLIEAEPRGSESCKLSTKDVTNVTVVKKPYEL 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02671 967 Gene3D Ribonuclease Inhibitor 35 184 IPR032675 -
Vimu10g02671 967 ProSiteProfiles Protein kinase domain profile. 657 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02671 967 FunFam Receptor protein-tyrosine kinase CEPR1 292 578 - -
Vimu10g02671 967 FunFam receptor protein-tyrosine kinase CEPR1 640 741 - -
Vimu10g02671 967 SUPERFAMILY L domain-like 84 358 - -
Vimu10g02671 967 ProSitePatterns Serine/Threonine protein kinases active-site signature. 785 797 IPR008271 GO:0004672|GO:0006468
Vimu10g02671 967 SUPERFAMILY Protein kinase-like (PK-like) 643 937 IPR011009 -
Vimu10g02671 967 FunFam Leucine-rich repeat receptor-like protein kinase 185 288 - -
Vimu10g02671 967 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 17 225 - -
Vimu10g02671 967 Gene3D Ribonuclease Inhibitor 185 288 IPR032675 -
Vimu10g02671 967 SUPERFAMILY RNI-like 261 579 - -
Vimu10g02671 967 Gene3D Transferase(Phosphotransferase) domain 1 742 962 - -
Vimu10g02671 967 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 742 955 - -
Vimu10g02671 967 Gene3D Ribonuclease Inhibitor 292 579 IPR032675 -
Vimu10g02671 967 Pfam Protein kinase domain 659 935 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02671 967 Gene3D Phosphorylase Kinase; domain 1 640 741 - -
Vimu10g02671 967 SMART serkin_6 657 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02671 Vimu-Chr10 38154119 38157529 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02671 33 944 Receptor kinase-like Gene Family AT5G49660 64.309 0.0 1196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu10g02671 Pkinase 4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02671 - - gmx:100785822 1686.39