Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02669 ATGTCCGCCGCCTTTCGTCTCCTTCTTCTTCTCTCACTCTTCTCTCTACTCACCGCCCAACAGCAAGACCAGCGTCAAATCCTTCTCAACCTAAAATCCTCTCTCAAGAGTTCAAATTTTTCAAAACTCTTTGACTCATGGAATGACACCAACTCCGTTTGCAGTTTCAACGGAGTAACTTGCAACACCCTCCGTTCGGTCACCGAAATCAACCTCTCCAACCAAAATCTGACTGGGGTTCTTCCCTTTGACTCTCTCTGCAGCCTTCCATCGCTACAGAAACTCGCGTTCGGCTACAACGGCTTGTATGGCAATGTTTCAGAGGACATTAGAAAATGTGTCACCTTGCGCTACTTGGATTTGGGAAACAACCTTTTCTCTGGTCCCTTTCCCGACATATCTCCTCTTAATCAGTTGGAGTATTTGTTTTTAAACAAAAGTGGATTTTCTGGCACTTTTCCGTGGCAGTCGCTGTTAAACATGACGGGTCTGCTGCAGTTAAGTGTCGGAGATAACCCTTTCGATTTCACGCCGTTTCCCAAAGAGGTTGTGAGTCTCAAGAAGCTGAATTGGCTCTACCTGTCCAACTGCACCCTCGGAGGGAAACTTCCGGTGGGACTTGGCAACCTCACGGAGCTCACGGAATTGGAATTCTCCGACAATTACATCACCGGCGAATTTCCCGCGGAGATTGTGAACCTCCGGAAACTCTGGCAGCTTGAGTTTTTCAACAATTCCTTCACGGGGAAGATTCCAACCGGGTTGAGAAACCTCACGGGGCTAAAGTATTTGGACGGCTCCATGAATAGACTCGAAGGGAATCTTTCTGAATTGAAGTACTTGACCAATCTGGTTTCGCTGCAATTTTTTGAGAACAATTTGTCAGGGGAGATTCCTGATGAAATAGGCGAATTCAAAGGCCTCAAGGCCCTGTCTCTGTACAGGAACAAATTGATAGGTCCTATTCCTCAGAAGGTTGGTTCCTGGGCTGAGTTTGAATTCATCGACGTGTCGGAGAATTTCTTGTCGGGGTCTATTCCGCCGGAGATGTGTAAAATGGGGAAGATGAACGCACTGCTCGTGCTTCAGAACAATCTCTCCGGCGAGATTCCGGCGACCTATGGAGACTGTTGGAGTATGAAGCGATTCAGAGTCAGCAATAACTCGCTCTCGGGTACCGTGCCACCGGCGATTTGGGGATTGCCCAACGCCGAAATTATCGATATTGAGCTGAATCAGTTCGAAGGTTCGGTTGCTTCGGATATCAGAAACGCCAAAACATTAGGTTCAATATTAGCTAGGCAAAATCGGTTGTCCGGTGAAATACCGGAAGAAATCTCCAAAGCAACGTCGTTGGTGACTGTGGACCTGAGCGAGAATCAGATTTCGGGGAAGATTCCAGAAGGAATCGGGGAGCTTAAAGAACTAGGTAGTCTTCATTTGCAGAGCAATAGGTTAACAGGTTCGATACCGGAATCTCTCGGTTCCTGCAAATCCCTCAACGACATTGACCTATCGAGGAATTTACTCTCTGGAGAAATCCCCACCTCGTTGGGTTCTTTCCCCGCGCTGAATTCTCTGAATCTTTCAGACAACGATCTCTCGGGTGAAATTCCTGGGGGTTTAGCGTTCCTCAGGTTAAGCCTCTTTGATCTATCGTACAACCGGTTAACGGGTCCAATTCCTCAGGCTCTAACCCTCGAAGCTTACAACGGAAGCCTCTCAGGAAACCCCGGTTTGTGCAGCGTCGACGCCATCAACTCCTTCCCTCGTTGCTCTTCTTCCTCTGGCATGTCCAAGGACATGCGTGATCTCGTAATTTGCTTCGCGATAGCGTCGATATTATTGCTTTCCTGTTTGGGCGTTTACTTGCAGCTGAAGAGGAGAAAGGAGGAGGGAGAAAGATTCGGAGAACGTTCGTTGAAGGAAGAATCCTGGGACGTGAAATCGTTCCACGTGTTAAGTTTCTCGGAGGGGGAGATTCTAGATTCCATCAAGCAGGAGAATCTGATAGGAAAAGGAGGTTCAGGAAACGTTTACAGAGTCACGCTTTCCAACGGAAAAGAACTGGCGGTGAAGCATATTTGGAACACCGATGTACCCGCGCGGAAAAAGTCGTGGAGCAGCACTCCCATGCTTGGGAATAAGCAGGGCGGGAAGTCGAAGGAGTTCGATGCAGAGGTTCAGGCTTTGAGCTCCATAAGGCATGTGAATGTGGTGAAGCTTTATTGCAGCATAACGAGTGAAGATTCGAGCTTGTTGGTGTACGAGTATTTACCCAACGGAAGCTTGTGGGATCGGCTTCACACAAGTAGAAAGATGGAGCTTGATTGGGAAACGAGGTACGAAATCGCTGTTGGGGCAGCCAAAGGATTAGAGTATTTGCATCACGGATGCGAACGGCCCGTGATTCACAGAGATGTCAAGTCTAGTAACATCTTGTTGGATGAGTTTCTGAAACCTAGAATTGCGGATTTTGGGCTTGCCAAGGTTATTCAGGCCAACGTTGGAAAGGATTCTTCCTCTCGTGTCATCGCCGGAACCCACGGTTACATTGCTCCAGAATATGGTTATACATACAAAGTGAATGAGAAGAGTGACGTGTACAGTTTTGGAGTGGTGCTGATGGAGCTGGTAACTGGAAAAAGGCCAAATGAAGCAGAATTTGGGGAGAATAAGGATTTGGTGAGTTGGGTCCATAACATGGCACGGAGCAAAGATGGTCTTAGGAGTGCTGTGGATTCGAGGATTCCCGAAATGTATAAAGAGGAAGCTTGCAAGGTTTTGAGAACCGCGGTTCTGTGCACTGGAACTCTTCCAGCTTTAAGACCGACCATGAGAGCTGTGGTTCAAAAACTTGAGGATGCTGAGCCTTGTAAACTGGTTGGGATTGTTATCAGCAAAGACGGTGGTGAAAAGAAAATAGGGCAGGCTGAAGCTTATGTATATGATGATGATCAAGGGGAACCAAGCAACCAACTTTGA 2985 0.476 MSAAFRLLLLLSLFSLLTAQQQDQRQILLNLKSSLKSSNFSKLFDSWNDTNSVCSFNGVTCNTLRSVTEINLSNQNLTGVLPFDSLCSLPSLQKLAFGYNGLYGNVSEDIRKCVTLRYLDLGNNLFSGPFPDISPLNQLEYLFLNKSGFSGTFPWQSLLNMTGLLQLSVGDNPFDFTPFPKEVVSLKKLNWLYLSNCTLGGKLPVGLGNLTELTELEFSDNYITGEFPAEIVNLRKLWQLEFFNNSFTGKIPTGLRNLTGLKYLDGSMNRLEGNLSELKYLTNLVSLQFFENNLSGEIPDEIGEFKGLKALSLYRNKLIGPIPQKVGSWAEFEFIDVSENFLSGSIPPEMCKMGKMNALLVLQNNLSGEIPATYGDCWSMKRFRVSNNSLSGTVPPAIWGLPNAEIIDIELNQFEGSVASDIRNAKTLGSILARQNRLSGEIPEEISKATSLVTVDLSENQISGKIPEGIGELKELGSLHLQSNRLTGSIPESLGSCKSLNDIDLSRNLLSGEIPTSLGSFPALNSLNLSDNDLSGEIPGGLAFLRLSLFDLSYNRLTGPIPQALTLEAYNGSLSGNPGLCSVDAINSFPRCSSSSGMSKDMRDLVICFAIASILLLSCLGVYLQLKRRKEEGERFGERSLKEESWDVKSFHVLSFSEGEILDSIKQENLIGKGGSGNVYRVTLSNGKELAVKHIWNTDVPARKKSWSSTPMLGNKQGGKSKEFDAEVQALSSIRHVNVVKLYCSITSEDSSLLVYEYLPNGSLWDRLHTSRKMELDWETRYEIAVGAAKGLEYLHHGCERPVIHRDVKSSNILLDEFLKPRIADFGLAKVIQANVGKDSSSRVIAGTHGYIAPEYGYTYKVNEKSDVYSFGVVLMELVTGKRPNEAEFGENKDLVSWVHNMARSKDGLRSAVDSRIPEMYKEEACKVLRTAVLCTGTLPALRPTMRAVVQKLEDAEPCKLVGIVISKDGGEKKIGQAEAYVYDDDQGEPSNQL 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02669 994 Pfam Leucine rich repeat 475 534 IPR001611 GO:0005515
Vimu10g02669 994 Gene3D Phosphorylase Kinase; domain 1 648 758 - -
Vimu10g02669 994 SUPERFAMILY Protein kinase-like (PK-like) 656 953 IPR011009 -
Vimu10g02669 994 ProSitePatterns Protein kinases ATP-binding region signature. 671 693 IPR017441 GO:0005524
Vimu10g02669 994 SUPERFAMILY RNI-like 55 320 - -
Vimu10g02669 994 ProSiteProfiles Protein kinase domain profile. 665 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02669 994 FunFam Receptor-like protein kinase HAIKU2 648 758 - -
Vimu10g02669 994 Gene3D Ribonuclease Inhibitor 365 599 IPR032675 -
Vimu10g02669 994 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 15 953 - -
Vimu10g02669 994 Gene3D Ribonuclease Inhibitor 20 180 IPR032675 -
Vimu10g02669 994 Gene3D Ribonuclease Inhibitor 181 277 IPR032675 -
Vimu10g02669 994 Pfam Leucine rich repeat N-terminal domain 22 62 IPR013210 -
Vimu10g02669 994 ProSitePatterns Serine/Threonine protein kinases active-site signature. 803 815 IPR008271 GO:0004672|GO:0006468
Vimu10g02669 994 Pfam Protein kinase domain 667 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02669 994 FunFam Receptor-like protein kinase 7 106 355 - -
Vimu10g02669 994 SUPERFAMILY L domain-like 269 591 - -
Vimu10g02669 994 Gene3D Ribonuclease Inhibitor 278 364 IPR032675 -
Vimu10g02669 994 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 356 596 - -
Vimu10g02669 994 Gene3D Transferase(Phosphotransferase) domain 1 759 962 - -
Vimu10g02669 994 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 759 968 - -
Vimu10g02669 994 SMART serkin_6 665 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02669 Vimu-Chr10 38126181 38129313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02669 5 973 Receptor kinase-like Gene Family AT1G09970 60.678 0.0 1147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu10g02669 Pkinase 8.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02669 - - gmx:100779554 1672.91