Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02668 ATGGCGATGCACCCGGAAAACTCTGGAAGTGAGAAGAAGATTCTCGTGGAGGTGGAGCATACTACTAATGGAGCTGGCACGCCCGGTGGGACTGAGGAAAACCAAACGGGTGAAGGGCAAGTTGAAACCGGTCGGACGATAGCTGAGAACCGACCGGATGAATTTCGAACAGACCTTGGTGATGACACAGATGGTATCATGCCTGAGGAGAATGTTCAGAAATCGTTCGAGGCGTTCTACGAGGAATGGCTTGCGCGACACGGAAATTTCCTTCAGCAGCTTCTGAGCGTCGCGCCCAATGATAACGATGCAGAACAGAGGATGCTGATCGAGCAAGTTATGTGTCATTACCAGCAATTTTTGGAAGAGAAATCGAACGTGGCCAACGACGACATTTTCCTTCTCTTTTCCCCGCCCTGGCTTTCCGCCTACGAGAGAGGGAGAAAATGGAGCGAGTCAAGGACGACACCAAGCGAGCTGAGAGAGAGGTTTCCGAGGCAATGGCTTCCGTTCAAGAGAGCATGGCGAGTCCGCGCATGCTGGCGCTCGTCAGAGTGGTTGACGGCGAGAAAACTGAGCAGCAAGCGGCGCTTCAGGGACTCAAGGAAGCGCTTAAGACGATTTCAGAGAAAGGCACGCGCTTCGCGCGTCGACGATGAGGAAGGTGGTGGAGATCTTAAGCCCGACGCAGACAGTGCAGTTATTGACGGCGACGACGCGCTTTCAGATGCGCGTAAGGAAGAACGGTTTGCATCGAGACGAGATTGTGTTTTTTCTGGTGTCCAGTTTAGTATTCCTGTTGTGGGTATTCCTGTTGTGGGTGTAGATCTTGATGTTGCAGGTGTAAACGCTGCCGGCAATACGAACAATGGGTTTTGGGAGGTGCGTAATGGAACCGCAAATGGAACAGCGGATGTAGTGTCGCCGCAGTGCCAGAAAGCAACCGCTGATCGATTTGCGGTTGATTTGGTTTGGGGGTGCAGGGGAGAAACGCAGTTCAAACTGCGGATTGGGAGCAACGCATTTCATATTGCGGTTTGTGAAAACCACATTTCATATTGCGTTCTTTCTTGCAAGTTGCTACTTTTGAGCACCGGTTTTAGTGACCAATACGTTTTGAACGTTTCAGATGAGAGGGGAGATGAAGGTGGCTGTGGTGTGCTGGTCCAGGCATGTCCACGCAGAGAAGCAGAGCATCTTCTGTCTCTCTCGCGTTCCATCCGCGACGAACTCCGACTCCAGCTCTGA 1248 0.52 MAMHPENSGSEKKILVEVEHTTNGAGTPGGTEENQTGEGQVETGRTIAENRPDEFRTDLGDDTDGIMPEENVQKSFEAFYEEWLARHGNFLQQLLSVAPNDNDAEQRMLIEQVMCHYQQFLEEKSNVANDDIFLLFSPPWLSAYERGRKWSESRTTPSELRERFPRQWLPFKRAWRVRACWRSSEWLTARKLSSKRRFRDSRKRLRRFQRKARASRVDDEEGGGDLKPDADSAVIDGDDALSDARKEERFASRRDCVFSGVQFSIPVVGIPVVGVDLDVAGVNAAGNTNNGFWEVRNGTANGTADVVSPQCQKATADRFAVDLVWGCRGETQFKLRIGSNAFHIAVCENHISYCVLSCKLLLLSTGFSDQYVLNVSDERGDEGGCGVLVQACPRREAEHLLSLSRSIRDELRLQL 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02668 415 Pfam Seed dormancy control 95 150 IPR025422 GO:0006351|GO:0043565
Vimu10g02668 415 MobiDBLite consensus disorder prediction 47 63 - -
Vimu10g02668 415 PANTHER DOG1 DOMAIN-CONTAINING PROTEIN 75 150 - -
Vimu10g02668 415 MobiDBLite consensus disorder prediction 24 43 - -
Vimu10g02668 415 MobiDBLite consensus disorder prediction 213 232 - -
Vimu10g02668 415 MobiDBLite consensus disorder prediction 1 67 - -
Vimu10g02668 415 ProSiteProfiles DOG1 domain profile. 73 284 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02668 Vimu-Chr10 38084750 38096134 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02668 75 150 bZIP Transcription Factor Family AT5G06950 32.468 4.80e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02668 - - vra:106760373 160.614