Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu10g02655 | ATGGGTACTGGTTGGAGGAGAGCCTTCTGCACCCGCGACCCAGCTTCTACCATATCGGATAAACAGCCCGGCAGCCCAAGCCCAAGCCCCAGCCCAAGAAGCTGTGCCCGTTTGGGTTTTCTCTCCGGAGGGAGCAACCCTTCCACCCCACGCTTGCGCTGCACAACTACACCAGAATCTGCTTCTCAAACAGTTACTGTAAACGAAAGCCCCAGAGTTCAAAGCAAGAACATCTCCAGAACAACTAAGTCTCCCAAAACGCTTTCTGTCTCAAATCCATCTTCACCTCGTTCTCCTCTCAAGCTCTCCCTCTTCAAGAACAGTTTCAAATTCAGGAGTAGCTGTGGAATTTGCTTGAACAGCGTGAAGACGGGACAGGGTACGGCTATTTACACTGCGGAATGTGGTCACGCGTTTCATTTCCCGTGTATCGCAGCGCATGTGCGCAAACATGGTAGCCTGGTGTGCCCCGTCTGCAACGCCACGTGGAAGGACGTCCCATTACTCGCGGCGCACAAGAACCTCGCTGCGCAATCCGCCACGCAAAACGACGTCGCTCAAAGGACCACCGAAAACACCAATGCCAACGTCAAAAAGCCAACAGAAAACACATCCCCCGTTTTCAAGACCTACAACCAGGTGGAGCCCCCGCCGAAACATACCGATTCGCTTCGGTCCTACGACGACGACGAGCCACTCCTCTCTCCCACCTCAGGCGGAAGGATCATTCCTATTCCCGAAGCCGATGAGAATGTCGAAGAAGACGACGAAGAAGAAGACGCCGGGGAGTTCCAGGGCTTTTTCGTCAACACCAGGAACTCCTCCTCCTCAAAATCGTACTCCGATTCATTCCAAACAACTGACGGAGATTCCAGAACGGTTCAGGTGAAACTCATGCCGGAGTGCGCAGTTATCTCAACTTCCCGAACGCACGAGACCTACGCGTTGGTGTTGAAAGTCAAGGCTCCGCCTCCACCATCTCCACCACGGAGCAGTACGGCGCCATCGCAACGTGCGCCGATAGATCTCGTCACCGTGCTGGACGTTGGTGGAAACATGACCGGAGCGAAGCTGCACATGCTGAAGCGCGCGATGCGTTTGGTTGTTTCATCGCTTGGCCCCGCTGACAGGCTCTCAATCGTCGCTTTCTCAGCCACTTCGAAACGGCTCTTGCCTCTGCGCAGAATGACGGCCCAGGGTCAGCGCGTGGCTCGACGTATAGTTGACCGGCTCGTTGTAGGTCAAGGCTCGAGCGTTGGCGAAGCGTTGAGGAAGGCGACGAGAGTGTTAGAGGATCGCAGAGAGAGAAACCCGGTGGCGAGCGTGATGCTGTTATCGGACGGTCAAGAAGAGAGGGTTCAGTATCAGAGGGGTAACAGTAGTGGTCAGAGGAAGGCTTCGAGTCACGTGTCGTCGACGCGGTTCGCGCATATCGAGATTCCGGTTCACGCTTTCGGGTTCGGGGCGAAAAGCGGTTTCAGCCAGGAACCGGGGGAGGAGGCGTTCGCGAAGTGCGTGGGTGGGCTTCTGAGCGTAGTGGTGCAGGATTTGAGGATTCAAGTGAGCTTTGAGTCAGAGGCGGTGGAGATGAGCGCGATTTACTCGTGCAGTGGAAGGCCCAGTCTGCTGAGCTCAGGGGCGGTGAGGCTGGGCGACTTGTACGCGGAGGAAGAGAGGGAGCTGTTGGTGGAGTTGAGAGTTCCCGCGTCGTCAGGTCCTGGGACCCACCACGTGATGGCTGTACGGTGCCTCTATAAGGACCCTGCTAGCCAGGAGATCGTATACGGTAGGGAGCAGGGTCTTCTGGTGCCGCCGCCTCAGAGCCTGCGTTGTTCCGGTACTAGGATCCAGAGGCTCAGGAATCTCTTCATAACTACCCGAGCCATTGCAGAGTCCAGGAGGCTTCTTGAGCATAACGCTGACTTCACCAGCGCGCATCATTTGCTTGCCTCAGCGCGTGCACTTCTAATGCACTCCAACGCCGCTTCGGCTGATGACTACATGCGCGCCTTGGAGGCCGAGCTGGCAGAGCTTCATTGGCGAAGACAGCACGAGCAGGTACAGGTTCAGCAACAGCAGCAAAGTGTGCAACAGCGGAGAAGAGGGAGTGAGAGAGAGGTGACTTTGGTGGACGAGAATGGGGAGCCGCTTACACCGACGTCGGCTTGGAGAGCCGCCGAGAAGCTGGCTAAGGTGGCGATGATGAAGAAGTCTTTGAACAGAGCATATGAGAGAGAGAAAAAGGGATGGGGCATGGTAGTAGAATGGAATGGGGACAAGGTGGTAGCAGACGGCGCGGCCCTTTCTGCATTGGAAGATGACCAGAGAGAAGAGGGCATGGCCCACCCTTAA | 2352 | 0.5621 | MGTGWRRAFCTRDPASTISDKQPGSPSPSPSPRSCARLGFLSGGSNPSTPRLRCTTTPESASQTVTVNESPRVQSKNISRTTKSPKTLSVSNPSSPRSPLKLSLFKNSFKFRSSCGICLNSVKTGQGTAIYTAECGHAFHFPCIAAHVRKHGSLVCPVCNATWKDVPLLAAHKNLAAQSATQNDVAQRTTENTNANVKKPTENTSPVFKTYNQVEPPPKHTDSLRSYDDDEPLLSPTSGGRIIPIPEADENVEEDDEEEDAGEFQGFFVNTRNSSSSKSYSDSFQTTDGDSRTVQVKLMPECAVISTSRTHETYALVLKVKAPPPPSPPRSSTAPSQRAPIDLVTVLDVGGNMTGAKLHMLKRAMRLVVSSLGPADRLSIVAFSATSKRLLPLRRMTAQGQRVARRIVDRLVVGQGSSVGEALRKATRVLEDRRERNPVASVMLLSDGQEERVQYQRGNSSGQRKASSHVSSTRFAHIEIPVHAFGFGAKSGFSQEPGEEAFAKCVGGLLSVVVQDLRIQVSFESEAVEMSAIYSCSGRPSLLSSGAVRLGDLYAEEERELLVELRVPASSGPGTHHVMAVRCLYKDPASQEIVYGREQGLLVPPPQSLRCSGTRIQRLRNLFITTRAIAESRRLLEHNADFTSAHHLLASARALLMHSNAASADDYMRALEAELAELHWRRQHEQVQVQQQQQSVQQRRRGSEREVTLVDENGEPLTPTSAWRAAEKLAKVAMMKKSLNRAYEREKKGWGMVVEWNGDKVVADGAALSALEDDQREEGMAHP | 783 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu10g02655 | 783 | ProSiteProfiles | Zinc finger RING-type profile. | 115 | 160 | IPR001841 | - | |
| Vimu10g02655 | 783 | MobiDBLite | consensus disorder prediction | 181 | 219 | - | - | |
| Vimu10g02655 | 783 | MobiDBLite | consensus disorder prediction | 181 | 288 | - | - | |
| Vimu10g02655 | 783 | SMART | ring_2 | 115 | 159 | IPR001841 | - | |
| Vimu10g02655 | 783 | ProSiteProfiles | VWFA domain profile. | 342 | 488 | IPR002035 | - | |
| Vimu10g02655 | 783 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 108 | 212 | IPR013083 | - | |
| Vimu10g02655 | 783 | MobiDBLite | consensus disorder prediction | 249 | 263 | - | - | |
| Vimu10g02655 | 783 | SMART | VWA_4 | 340 | 522 | IPR002035 | - | |
| Vimu10g02655 | 783 | SUPERFAMILY | vWA-like | 340 | 518 | IPR036465 | - | |
| Vimu10g02655 | 783 | CDD | RING-H2_WAVH2 | 112 | 165 | - | - | |
| Vimu10g02655 | 783 | Pfam | von Willebrand factor type A domain | 343 | 449 | IPR002035 | - | |
| Vimu10g02655 | 783 | PANTHER | CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR | 113 | 741 | - | - | |
| Vimu10g02655 | 783 | MobiDBLite | consensus disorder prediction | 1 | 97 | - | - | |
| Vimu10g02655 | 783 | Pfam | RING-like zinc finger | 115 | 144 | IPR001841 | - | |
| Vimu10g02655 | 783 | MobiDBLite | consensus disorder prediction | 267 | 288 | - | - | |
| Vimu10g02655 | 783 | CDD | vWA_C3HC4_type | 341 | 514 | - | - | |
| Vimu10g02655 | 783 | Gene3D | von Willebrand factor, type A domain | 342 | 523 | IPR036465 | - | |
| Vimu10g02655 | 783 | MobiDBLite | consensus disorder prediction | 41 | 97 | - | - | |
| Vimu10g02655 | 783 | SUPERFAMILY | RING/U-box | 108 | 165 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu10g02655 | Vimu-Chr10 | 37957606 | 37960138 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vimu10g02655 | 107 | 262 | C3H Transcription Factor Family | AT3G03550 | 25.316 | 2.83e-06 | 48.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu10g02655 | - | - | gmx:100782780 | 1160.21 |