Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02654 ATGTCTCCACCATTGCTGGGCATAGGAGAGGAGGAGGGTAAAAGCAATGTCACTTTGTTGGTTTCCTCATCAACCACCATGGAAAGTGTGTGCCTGAAGACCTTAGAATTGAAAGAACGCAACTACATGGGGTTATCTGATTGTTCTTCTGTAGACAGCTCAGTTCCGTCTTTCTCAGAAGAGACTAAAAGTAATCTGAACCTGAAAGCCACCGAGCTCAGGCTTGGGCTTCCGGGATCACAGTCCCCTGAAAGAGATTCCGATTTTTGCTTGAGAAGCTCAAATCAATTTGATGAAAAACCCTTGTTTCCTTTGCGTCCTCTCACTGATGATCACCATTCTTCAACCAAGACTGCTGTTTTGGGAAACAAGAGAGGGTTTTCAGATGCCATGAATGGCTTCTCGGAGGGGAAGTTCCTAATTGATTCTGAGAACAATCCTATACTATCTCCGAGGCCCGGTTCTAACTTGGGATTAAATCCTGGTTCTACACTTGAGAAGGCTGGGTCTCAGCAAATCAAAATGAAAGAAGCAGCAACAGCAAAGGAGCCTCATTCTGCCAATGAAACTAGACCAAGTATTGATTGTTCTGCAAATAACAATAACAGTGCACCAGCTACCAAGGCTCAGGTTGTGGGGTGGCCCCCTATAAGATCATTCAGGAAGAATTCGTTGGCAACTAATTCAAAGAACAATGAAGAAGTTGATGAAAAAGTAGGGGTTGGTGCACTGTTCGTCAAAGTCAGTATGGATGGGGCTCCCTATTTAAGGAAAGTGGACTTGAATAATTACTCTACATATCCAGAACTATCTTCTGCTCTCGAGAAGATGTTCAGCTGTTTTACCATAAGTCAGTGTGGATCTCATGGAATTCTGGGCAGGGAAATGCTGAATGAAACCAAGCTGAAGGACCTTCTTCATGGATCAGAATATGTTCTTACATATGAGGACAAAGATGGCGATTGGATGCTTGTGGGTGATGTTCCCTGGGAGATGTTTATTGAAACATGCAAGAGGTTGAGGATCATGAAGAGTTCTGATGCCATTGGTTTAGGTATGTTTTATCGAACACATCTATCTTATAAGTATAACTTTGAACATACTTGTCTGAAAATTGTGTATGTAGGAAAGGAAAAGCAATGA 1143 0.4252 MSPPLLGIGEEEGKSNVTLLVSSSTTMESVCLKTLELKERNYMGLSDCSSVDSSVPSFSEETKSNLNLKATELRLGLPGSQSPERDSDFCLRSSNQFDEKPLFPLRPLTDDHHSSTKTAVLGNKRGFSDAMNGFSEGKFLIDSENNPILSPRPGSNLGLNPGSTLEKAGSQQIKMKEAATAKEPHSANETRPSIDCSANNNNSAPATKAQVVGWPPIRSFRKNSLATNSKNNEEVDEKVGVGALFVKVSMDGAPYLRKVDLNNYSTYPELSSALEKMFSCFTISQCGSHGILGREMLNETKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIETCKRLRIMKSSDAIGLGMFYRTHLSYKYNFEHTCLKIVYVGKEKQ 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02654 380 SUPERFAMILY CAD & PB1 domains 242 344 - -
Vimu10g02654 380 ProSiteProfiles PB1 domain profile. 243 345 IPR000270 GO:0005515
Vimu10g02654 380 MobiDBLite consensus disorder prediction 150 170 - -
Vimu10g02654 380 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 66 350 IPR003311 GO:0005634|GO:0006355
Vimu10g02654 380 MobiDBLite consensus disorder prediction 186 208 - -
Vimu10g02654 380 MobiDBLite consensus disorder prediction 150 210 - -
Vimu10g02654 380 FunFam Auxin-responsive protein 238 355 - -
Vimu10g02654 380 Gene3D - 238 357 - -
Vimu10g02654 380 Pfam AUX/IAA family 71 352 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02654 Vimu-Chr10 37922049 37926214 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02654 246 348 B3 DNA Binding Superfamily AT2G46530 33.981 5.19e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vimu10g02654 AUX_IAA 1.2e-90 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02654 K14484 - gmx:100783314 578.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02654 10 37922049 37926214 Vimu10g02654 10 37922049 37926214 ECH