Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02652 ATGGAGCACTATGACCGTGATTTCTTGGAGGAACTGATAAGTACAGAAGAAACCCAGTTCTTCTGTAATGGCTGGAGTAGTTTTGACTGTATTGATCAAAACTCTCTACCTTACCTCCCCAACTCTTCTTCTGGTCAAGAAGTTCCTCAAAGCTACAACGACTACTACCCCTTCAATGAAATCTATGGCTCTTTACTCGATGAATCCTCACCACAGATTATCGATTCTTACTATAGTACACTTGATACTCCACTCAACACCCTTGGTCAAGAGGATTATCCATTGTCCTTTATGGAAGAAGAGGACCCCGGTATGCTTGGGGAAGAGCTTAAGAATTTGGAGCTGCAAACTACGTGCAAAGCGGAGCCAACCCAGTCCTCCGAAATGCCAGTTTTCAACATCGGAACGGGTCTGGAAAGAAAAAACCGGTCAAAGAAGCTTCAGGGGCAACCCTCCAAGAATCTAATGGCGGAGAGGAGAAGAAGGAAGAGATTAAATGACAGACTCTCAATGCTGAGAGCTATTGTTCCCAAGATAAGTAAGATGGATAGAACATCTATACTTGGGGACACTATTGATTACATGAAAGAACTTCTGGAGAAGATCAACAATCTTAAGCAAGAAGTAGAAATGGATTCTAAAATGGCATGCGTTTTCAAAGATGTGAAGCCAAATGAAATCTTAGTGAGAAATTCACCCAAGTTTGAAGTGGAGAGGAGTGCGGACACACGGGTGGAAATTTGCTGTGCAGGAAAGCAAGGATTGTTACAATCAACAGTAAACACTCTGGAGGCTTTAGGCCTTGAGATTCAACAATGTGTTATTAGCTGTTTCAATGATTTCACAATGCAGGCTTCTTGCTCAGAGGAATCGGAGCAAAGGGCAATGCTGAGTTCTGACGATATAAAACAAGCATTGTATAGAAGTGCAGGATATGGAGGAAGGTGTTTGTGA 954 0.4245 MEHYDRDFLEELISTEETQFFCNGWSSFDCIDQNSLPYLPNSSSGQEVPQSYNDYYPFNEIYGSLLDESSPQIIDSYYSTLDTPLNTLGQEDYPLSFMEEEDPGMLGEELKNLELQTTCKAEPTQSSEMPVFNIGTGLERKNRSKKLQGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILGDTIDYMKELLEKINNLKQEVEMDSKMACVFKDVKPNEILVRNSPKFEVERSADTRVEICCAGKQGLLQSTVNTLEALGLEIQQCVISCFNDFTMQASCSEESEQRAMLSSDDIKQALYRSAGYGGRCL 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02652 317 Pfam Helix-loop-helix DNA-binding domain 155 198 IPR011598 GO:0046983
Vimu10g02652 317 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 57 311 - -
Vimu10g02652 317 Gene3D - 150 220 IPR036638 GO:0046983
Vimu10g02652 317 SMART finulus 155 204 IPR011598 GO:0046983
Vimu10g02652 317 MobiDBLite consensus disorder prediction 140 161 - -
Vimu10g02652 317 Coils Coil 188 215 - -
Vimu10g02652 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 198 IPR011598 GO:0046983
Vimu10g02652 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 153 211 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02652 Vimu-Chr10 37895014 37896719 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02652 134 317 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 65.079 4.94e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu10g02652 HLH 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02652 - - gmx:100784380 537.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02652 10 37895014 37896719 Vimu10g02652 10 37895014 37896719 ECH