Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02649 ATGGTGCTGAGGAAAGTGGGGAAGTATGAGATTGGGAGGACGATTGGGGAGGGGACTTTTGCGAAGGTGAAATTCGCTCAGAACACAGAAACTGGAGAGAGCGTGGCCATGAAAGTGCTCGACCGCAGCACCATCATCAAGCACAAGATGGTCGACCAGATCAAGAGGGAGATTTCCATTATGAAGCTTGTTAGGCATCCTTATGTTGTTCGCCTGTACGAGGCATGGTCTGTTTCGGTTCTTTTCAAAGTTGTCATCCAATTTGGAATCGTGATTGAATTATGGAATCTGGTGTCAATTAAGGTTCTTGCGAGCCGTACTAAGATTTACATCATACTGGAGTTCATCACGGGTGGTGAATTGTTCGATAAAATTATACACCATGGTCGTCTTAGTGAAGCTGATTCTAGAAAATATTTTCAACAGCTTATTGATGGTGTAGATTATTGCCACAGTAAGGGAGTTTATCACAGAGATTTAAAGCCTGAAAATCTCTTACTTGATTCTCTGGGAAATATAAAGATTTCCGATTTTGGTTTGAGTGCATTGCCTGAACAGGGAGTGAGTATCCTTCGAACTACTTGTGGGACCCCAAACTATGTAGCTCCTGAGGTACTCAGTCATAAGGGTTACAACGGTGCTGTGGCAGATGTTTGGTCCTGTGGGGTTATCCTCTATGTCCTACTGGCCGGATATCTTCCCTTTGATGAGCTTGATCTAACCACCTTATATACACTCTTCTATTCTGTGTTGAAAGGCTCAAGAAATATTGCATTATCTAAGGGTTGCGTTGCTAGTATTGAGAGAGCAGAATTTTCATGCCCTCCATGGTTTCCTGTGGCAGCAAAAATCTTGATAAATAGAATTTTGGACCCAAATCCTGAAACCCGTATAACCATTGAACAGATAAGAAATGATGAATGGTTTCAGAGGAGCTATGTTCCTGTCAGTCTTCTTGAGTATGAAGATGTAAATCTTGATGATATAAATGCTGCTTTTGATGAAACCGAGGAACAGAGGGCTGATCAACAATGTGATAACGAGGACATGGGTCCCTTAATTCTTAATGCATTTGACTTGATAATTCTCTCTCAAGGTTTAAATCTTGGAACAATCTTTGATCGTGGACAGGACTCTGTAAAGTACCAAACCCGCTTTGTAACTCAAAAGCCAGCAAAGGTGGTTTTATCAAGTATGGAAGTCGTGGCACAATCAATGGGATTTAAAACACATATTCGCAACTACAAGATGAGGGTAGAGGGTGTTTCAGCAAATAAAACATCCTATTTTTCGGTCATCATGGAAATTTTCGAAGTGGCTCCCACATTTTACATGGTGGACATTCAGAAAGCAGCTGGAGATACTGGTGAATACCTCAAGTTTTATAAGAACTTTTGTAGCAATCTTGAGGATATAATCTGGAAACCCCCTCATGAAGCAACCAAATCAAGGATCTCCAAGACCAAAAGCAAAAGGCGATAG 1482 0.413 MVLRKVGKYEIGRTIGEGTFAKVKFAQNTETGESVAMKVLDRSTIIKHKMVDQIKREISIMKLVRHPYVVRLYEAWSVSVLFKVVIQFGIVIELWNLVSIKVLASRTKIYIILEFITGGELFDKIIHHGRLSEADSRKYFQQLIDGVDYCHSKGVYHRDLKPENLLLDSLGNIKISDFGLSALPEQGVSILRTTCGTPNYVAPEVLSHKGYNGAVADVWSCGVILYVLLAGYLPFDELDLTTLYTLFYSVLKGSRNIALSKGCVASIERAEFSCPPWFPVAAKILINRILDPNPETRITIEQIRNDEWFQRSYVPVSLLEYEDVNLDDINAAFDETEEQRADQQCDNEDMGPLILNAFDLIILSQGLNLGTIFDRGQDSVKYQTRFVTQKPAKVVLSSMEVVAQSMGFKTHIRNYKMRVEGVSANKTSYFSVIMEIFEVAPTFYMVDIQKAAGDTGEYLKFYKNFCSNLEDIIWKPPHEATKSRISKTKSKRR 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02649 493 ProSitePatterns Protein kinases ATP-binding region signature. 15 47 IPR017441 GO:0005524
Vimu10g02649 493 Gene3D Kinase associated domain 1, KA1 354 475 - -
Vimu10g02649 493 Coils Coil 326 346 - -
Vimu10g02649 493 Pfam NAF domain 352 410 IPR004041 GO:0007165
Vimu10g02649 493 ProSiteProfiles Protein kinase domain profile. 9 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02649 493 ProSiteProfiles NAF domain profile. 350 374 IPR018451 GO:0007165
Vimu10g02649 493 FunFam Maternal embryonic leucine zipper kinase 94 355 - -
Vimu10g02649 493 Gene3D Transferase(Phosphotransferase) domain 1 3 353 - -
Vimu10g02649 493 FunFam Non-specific serine/threonine protein kinase 349 475 - -
Vimu10g02649 493 FunFam Non-specific serine/threonine protein kinase 1 88 - -
Vimu10g02649 493 SUPERFAMILY Protein kinase-like (PK-like) 6 321 IPR011009 -
Vimu10g02649 493 CDD CIPK_C 356 471 - -
Vimu10g02649 493 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 7 460 - -
Vimu10g02649 493 SMART serkin_6 9 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02649 493 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
Vimu10g02649 493 Pfam Protein kinase domain 9 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02649 Vimu-Chr10 37848302 37853343 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02649 1 435 CBL-interacting serine-threonine protein kinases AT4G24400 73.103 0.0 648
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vimu10g02649 Pkinase 6.1e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02649 - - gmx:100785444 810.831