Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02644 ATGGCTATGGCAGACAATAGGCGAAGAATTCTTCCTTATCCAGAAGATCGGTTACCTGGAAGATGCCAAACCTTGGGCTTCGCAGAAGCTGTCCTACTAACCAATCCCAAAGACCCACAATTGCAAGGAGAGGTGGATGACAAGTATCAGTATTCATGTGCAAACAAGGATAATCAAGTTCATGGGTGGATATCTTTCAGTCCACCAGTAGGCTTCTGGCAGATCACACCTAGTGATGAGTTTCGTTCTGGTGGACCCCTCAAACAAAATTTGACGTCACACGTAGGCCCCACCACACTTGCAATGTTTATTAGTGGTCACTATGCGGGACAAGATTTGGTGCCTAAAATTAGAGGTGGTGAATCGTGGAAGAAGGTTTTCGGTCCTGTATATATTTATCTCAATTCTGCACCAGTTGGTGACGACCCACTTTGGTTATGGGAGGATGCAAAAATACAGATGATGAATGAAGTTCAAAGTTGGCCATATCATTTCCCAGCTTCAGAGGATTTTTTAAAATCGGATCAGCGGGGCAACGTCAGTGGCAGATTACTTGTCTTAGACAAGTACATCTGCACAGACTTAATATCAGCAAATGGTGCTTATGTTGGCCTGGCCCCACCTGGAGATGCAGGGTCATGGCAAAGAGAATGCAAGGACTATCAATTCTGGACCAGAGCGGATGAGAATGGATTTTTTACCATTAGAAATGTACGTCCAGGAGACTATAACCTTTTTGCTTGGGTGCCTGGCTTTGTTGGGGACTACAAATTTGTAGATTATATGAAGATAACGCCAGGTTCTTACACTGAATTGGGTGAACTTGTATATGAGCCTCCAAGAGATGGTCCTACATTGTGGGAAATAGGTATTCCTGATAGATCTGCTGCGGAATTTTATGCTCCTGATCCCAATCCCCAATACATGAATAGGCTTTTTATCAACCATCCAGACAGGTTCAGGCAGTATGGATTGTGGGAAAGGTATACAGAATTGTATCCTGATGCAGATTTGGTTTACACAGTTGGTGTTAGTGACTATACGAAGGACTGGTTTTATGCGCAGGCTCCGAGGAAAAAAGAGGATAACACTCTTCAAGGGACCACCTGGCAAATCAAGTTCGAAGTCAGAAGCGTGGTTAAGGGAAGTACATACAAACTGAGAGTTGCAATTGCATCTGCAACATTAGCTGAATTGCAGGTGGTGATGGAAAATGGCATACTAAAAGTCACTTTATCAAATCCTGGGGGAATTGTGACTGGAATACAGTACAATAACATCGACAACTTGCTTGAAGTTTTGAATGACGAATCTAACAGAGGTAATGCAGTAATATGTTTTCAACTTCATGTAGGTATTGGGACCTTGTCTGGAGCTCGCCGACAAGTACAGCAACCAGTGAAGTTAAAGTCACACATTGTCATACGTGACTGCAGCATCAAAGGAACAGAGTTCCAAGTTATGGTTGAAAATGAGGACCAAGTTGAGGTATCCTTCACCAGGAAGTGGGACGTCTCTCTTGAAGGCAAGGTGGTTCCTTTAAACATTGACAAAAGGTTCATAATGCTTCGTGGTTGTTCGGGCTTCTACTCCTATGCAATTTATGAGCACTTACAGGAGTGGCCTGCTTTCAATCTTGACGAAACAAGAATTGCTTTCAAGCTTAGAAAAGACAAGTTCCATTATATGGCAATGGCTGATAATAGACAAAGAAACATGCCTCTTCCAGATGACAGATTACCACCTAAGGGCAAAGCCCTTGCCTACCCAGAAGCAGTTCTACTTGTCAATCCCATCGAACCAGAACTTAAGGGAGAGGTGGATGACAAGTACCAATATTCATGCGACAACAAAGACAACAAAGTTCATGGATGGATCTGCATGGATCCTGGAGTGGGATTCTGGCTTATTACGCCCACCGATGAGTTTCGATCTGGTGGGCCCCTCAAACAAAACTTAACTTCTCATGTTGGCCCCACCACGCTTGCCGTGTTTCTGAGTGCACATTATTCTGGAGAGGATTTGGTGCCTAAGTTTAATGTTGGTGAGGCATGGAAGAAAGTTTTTGGTCCTGTTTTCATTTATTTGAATTCTTCCTATGATGGAGGTGACCCCCTTAAGCTATGGGACGATGCTAAACAGCAGATGTTGGTGGAAGTTCAAAGCTGGCCCTACAGTTTCCCTGAATCAGAGGATTTTGCGAAGTGGGACGAACGTGGTAATGTTAGTGGCAGGCTTTTGGTTAGAGAGAGGTGTATAAACGATGACTATATCTCAGCAAAAGGTGCTTATGTTGGATTGGCTCTTCCAGGCGATGTGGGATCATGGCAAAGAGAATGCAAGAATTATCAGTTTTGGGCTAAAGCAGACGATGATGGCTACTTCTCCATCACCAATGTACGTGCAGGAGATTACAATGTTTACGCCTGGGTGCCTGGTTTTATTGGCTGTGAAATCGACCTTGGTGAGCTTGTGTATGAACCCCCTAGAGATGGTCCAACATTGTGGGAAATTGGCATTCCTGATCGAACAGCTGCTGAGTTCTATGTTCCTGACCCAAATCCCAAATATATCAACAAACTTTTTGTTAATCATCCTGACAAGTTTAGACAATATGGATTATGGGAGAGATATGCAGAACTCTACCCTGACAAAGACCTGATCTACACAATTGGTGTCAGTGACTACACCAAAGATTGGTTCTTTGCTCAAGTTACCAGGAAGAAAGATGACAACACATTTCAAGGAACCACTTGGCAGATAAAGTTTCAACTTGATAAGGTGAACAAAACCGGTAGCTATAAACTGCGGGTGGCTTTGGCATCTGCAACATTATCTGAACTTCAGGTTCGAGTTAATAATCCAAAGAGTCCTCGTCCTCTATTTTCAAGTGGGTTGATAGGAAGGGATAACTCGATCGCAAGGCATGGAATTCATGGACTTTATTGGCTTTACAATGTAGAGATTGCAGGAACTCAATTTGTTGAAGGAGAAAATACCATCTTTTTGACACAGAGCAGAGGAAATAGTCCATTTCAGGCAATTATGTATGATTATATTCGTCTGGAAGCTCCACCATCGTCTACCTTCAATAACACAAAGGAGAGTAGAGGAGCGGAGCTGCGGCGGCGCAAGGAGAAAGATAAAGGGAGTTCAGGAAGTAAGAGGCAAAGTGGCTTTTGA 3183 0.4339 MAMADNRRRILPYPEDRLPGRCQTLGFAEAVLLTNPKDPQLQGEVDDKYQYSCANKDNQVHGWISFSPPVGFWQITPSDEFRSGGPLKQNLTSHVGPTTLAMFISGHYAGQDLVPKIRGGESWKKVFGPVYIYLNSAPVGDDPLWLWEDAKIQMMNEVQSWPYHFPASEDFLKSDQRGNVSGRLLVLDKYICTDLISANGAYVGLAPPGDAGSWQRECKDYQFWTRADENGFFTIRNVRPGDYNLFAWVPGFVGDYKFVDYMKITPGSYTELGELVYEPPRDGPTLWEIGIPDRSAAEFYAPDPNPQYMNRLFINHPDRFRQYGLWERYTELYPDADLVYTVGVSDYTKDWFYAQAPRKKEDNTLQGTTWQIKFEVRSVVKGSTYKLRVAIASATLAELQVVMENGILKVTLSNPGGIVTGIQYNNIDNLLEVLNDESNRGNAVICFQLHVGIGTLSGARRQVQQPVKLKSHIVIRDCSIKGTEFQVMVENEDQVEVSFTRKWDVSLEGKVVPLNIDKRFIMLRGCSGFYSYAIYEHLQEWPAFNLDETRIAFKLRKDKFHYMAMADNRQRNMPLPDDRLPPKGKALAYPEAVLLVNPIEPELKGEVDDKYQYSCDNKDNKVHGWICMDPGVGFWLITPTDEFRSGGPLKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFNVGEAWKKVFGPVFIYLNSSYDGGDPLKLWDDAKQQMLVEVQSWPYSFPESEDFAKWDERGNVSGRLLVRERCINDDYISAKGAYVGLALPGDVGSWQRECKNYQFWAKADDDGYFSITNVRAGDYNVYAWVPGFIGCEIDLGELVYEPPRDGPTLWEIGIPDRTAAEFYVPDPNPKYINKLFVNHPDKFRQYGLWERYAELYPDKDLIYTIGVSDYTKDWFFAQVTRKKDDNTFQGTTWQIKFQLDKVNKTGSYKLRVALASATLSELQVRVNNPKSPRPLFSSGLIGRDNSIARHGIHGLYWLYNVEIAGTQFVEGENTIFLTQSRGNSPFQAIMYDYIRLEAPPSSTFNNTKESRGAELRRRKEKDKGSSGSKRQSGF 1060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02644 1060 MobiDBLite consensus disorder prediction 1028 1060 - -
Vimu10g02644 1060 FunFam Rhamnogalacturonate lyase B 735 821 - -
Vimu10g02644 1060 MobiDBLite consensus disorder prediction 1036 1053 - -
Vimu10g02644 1060 Pfam Polysaccharide lyase family 4, domain II 199 271 IPR029413 -
Vimu10g02644 1060 Pfam Polysaccharide lyase family 4, domain II 761 816 IPR029413 -
Vimu10g02644 1060 Gene3D - 832 1023 - -
Vimu10g02644 1060 CDD RGL4_M 176 275 IPR029413 -
Vimu10g02644 1060 Pfam Polysaccharide lyase family 4, domain III 834 1022 IPR029411 -
Vimu10g02644 1060 Pfam Polysaccharide lyase family 4, domain III 285 405 IPR029411 -
Vimu10g02644 1060 Gene3D - 737 817 - -
Vimu10g02644 1060 Gene3D - 173 271 - -
Vimu10g02644 1060 SUPERFAMILY Galactose-binding domain-like 831 1023 IPR008979 -
Vimu10g02644 1060 SUPERFAMILY Galactose mutarotase-like 543 699 IPR011013 GO:0003824|GO:0005975|GO:0030246
Vimu10g02644 1060 CDD RGL4_M 738 816 IPR029413 -
Vimu10g02644 1060 SUPERFAMILY Starch-binding domain-like 219 273 IPR013784 GO:0030246
Vimu10g02644 1060 SUPERFAMILY Galactose-binding domain-like 282 404 IPR008979 -
Vimu10g02644 1060 FunFam Rhamnogalacturonate lyase B 173 271 - -
Vimu10g02644 1060 CDD RGL4_C 836 1023 - -
Vimu10g02644 1060 SUPERFAMILY Starch-binding domain-like 776 815 IPR013784 GO:0030246
Vimu10g02644 1060 CDD RGL4_N 393 708 - -
Vimu10g02644 1060 CDD RGL4_N 15 143 - -
Vimu10g02644 1060 Gene3D - 32 142 IPR014718 GO:0030246
Vimu10g02644 1060 Gene3D - 398 707 IPR014718 GO:0030246
Vimu10g02644 1060 Pfam Rhamnogalacturonate lyase family 479 607 IPR010325 -
Vimu10g02644 1060 Pfam Rhamnogalacturonate lyase family 1 45 IPR010325 -
Vimu10g02644 1060 Pfam Rhamnogalacturonate lyase family 381 442 IPR010325 -
Vimu10g02644 1060 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02644 Vimu-Chr10 37804695 37814187 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02644 1 406 Polysaccharide Lyase AT1G09890 67.402 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02644 K18195 - gmx:100814721 1138.64