Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02643 ATGTTTTCTCTCGTCGACCAACTACTAGATTCCTATACGCCACCGTCCTCATCACGCAATCCCATTGATGAAAAGAATTTGAAAACTACGTTTGTCATCATACAGAAAAGCCCAAAGAGCTCAAAACCTAAGAAAAAGACGATGGACTTCACTAATCACTTTCTGTTCTTGATGCTGCAATTTCTCGTGGTTCTGGGAGGTGATACCAAACCAGGAGTACGATTGGATATTCAAGATAAACATGTGATAATGGACAATGGCATAGTCCAGGTCAACTTATCAAATCCTGAAGGAATTGTCACCGGAATTCGATATAATGGCATCGACAATTTGCTGGAAATTCTCAACGAAGAATACGACAGAGGGTACTGGGACATTGTTTGGGACGAAGGTGGAGAAAATAGAACAAAAAAAGGAGCAAAGGGAAAGGGTAGATTTGACAGAATGGAAGCCACAAATTTAACGGTGATAGTAGAAAACGAGGAACAAGTAGAGCTATCTTTCATCAGAAAATGGAATGAATCTTTTCAGGGGAAGCTTCCGCCACTCAACATTGACAAAAGGTTTATATTGCTTCGTGGTTCCTCTGGGTTCTACACCTATGCCATTTACGAGCATTTGAAGGAATGGCCAGCTTTTGATATCGACAATACAAGGATCGCATTCAAACCAAGGAAAGACAAGTTCCATTACATGTCTATAGCGGACAACAGGCAGAGATTTATGCCTCTGCCCGATGACCGGATACCCCCAAGAGGTCAAGTTCTTGCCTACCCTGAGGCTGTGCGTCTTGTTGACCCCGTGGAGCCCGAATTCAAAGGCGAGGTGGATGATAAATATGAGTATTCATGCGAGAGTCGATATAATCGTGTTCACGGCTGGATGAGCATTGATCCATTGAATTCCACCGGATTCTGGCTAATTACACCAAGCTATGAATTCCGATCTGCTGGACCCCTCAAGCAATATATTACTTCTCACGTTGGCCCCACCACACTCTCTGTATTTCATAGCACGCATTATTCAGGCGCGGATCTGATAATGAAATTTGGGCCTGATGAGCCGTGGAAGAAAGTCTATGGGCCCATATTCTTGTACCTTAATTCTCTATCCAACGGGGTTAGCCCAATCAAACTCTGGGAGGACGCCAAACAACAGATGGTCAATGAAGTTGAGAGCTGGCCCTATACATTTCCAGCTTCTAAGGACTTTCTCTCATCTGAGCAACGAGGTAAAGTCCAAGGTAGATTGCTTGTCCGAGACAGGAAGGTCAGTGATGCATTCATCCCAGTTAGTGGTGCTTATGTGGGACTAGCAGCCATAGGAGATGTTGGATCTTGGCAACGAGAATGTAAGGGTTATCAATTTTGGACCATTACTGATGATAAAGGTTATTTCTCAATTATTAACATACGCCCTGGGGACTATAATCTCTACTCCTGGGTCACTGGATACATTGGTGATTATCAATTCGATAAAATCATCAACGTAACTTCAGGTTGTGAAATTAATGTGCATGAGCTTGTTTATGAGCCACCTAGAGATGGTCCTACGTTGTGGGAAATAGGCATCCCTGATCGTTCAGCCGCTGAGTTCTATGTTCCTGACCCAAATCCCATGTACATTAACAAACTCTATGTCAACCATACAGACAGGTTTAGGCAATATGGTCTGTGGGAAAGATATGCTGATTTGTATCCAAATAAAGACCTAGTTTACACTGTTGGCGTTAGTGACTACAGAAAAGATTGGTTCTTTGCTCAGGTTAATAGCCTAGGTGTCTCAAAAGATGTCCTGTCTCTCTCCCTCTCTGATTACTTTCCTTTACTGTTCCGCAGGAAGAAAGATAATGGCACTTATCAAGGAACTACATGGCAAATTAACTTCAACCTTGATCGTGTGAATACCAATGGAAGCTACACATTGCGAGTGGCTCTGGCATCTGTGCATAGTGCAGAATTACAGGTCTAA 1971 0.4302 MFSLVDQLLDSYTPPSSSRNPIDEKNLKTTFVIIQKSPKSSKPKKKTMDFTNHFLFLMLQFLVVLGGDTKPGVRLDIQDKHVIMDNGIVQVNLSNPEGIVTGIRYNGIDNLLEILNEEYDRGYWDIVWDEGGENRTKKGAKGKGRFDRMEATNLTVIVENEEQVELSFIRKWNESFQGKLPPLNIDKRFILLRGSSGFYTYAIYEHLKEWPAFDIDNTRIAFKPRKDKFHYMSIADNRQRFMPLPDDRIPPRGQVLAYPEAVRLVDPVEPEFKGEVDDKYEYSCESRYNRVHGWMSIDPLNSTGFWLITPSYEFRSAGPLKQYITSHVGPTTLSVFHSTHYSGADLIMKFGPDEPWKKVYGPIFLYLNSLSNGVSPIKLWEDAKQQMVNEVESWPYTFPASKDFLSSEQRGKVQGRLLVRDRKVSDAFIPVSGAYVGLAAIGDVGSWQRECKGYQFWTITDDKGYFSIINIRPGDYNLYSWVTGYIGDYQFDKIINVTSGCEINVHELVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPMYINKLYVNHTDRFRQYGLWERYADLYPNKDLVYTVGVSDYRKDWFFAQVNSLGVSKDVLSLSLSDYFPLLFRRKKDNGTYQGTTWQINFNLDRVNTNGSYTLRVALASVHSAELQV 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02643 656 FunFam Rhamnogalacturonate lyase B 406 505 - -
Vimu10g02643 656 SUPERFAMILY Galactose-binding domain-like 515 655 IPR008979 -
Vimu10g02643 656 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 78 656 - -
Vimu10g02643 656 CDD RGL4_M 409 508 IPR029413 -
Vimu10g02643 656 Gene3D - 406 506 - -
Vimu10g02643 656 Pfam Polysaccharide lyase family 4, domain III 518 656 IPR029411 -
Vimu10g02643 656 Gene3D - 190 360 IPR014718 GO:0030246
Vimu10g02643 656 CDD RGL4_N 78 369 - -
Vimu10g02643 656 Pfam Rhamnogalacturonate lyase family 74 276 IPR010325 -
Vimu10g02643 656 SUPERFAMILY Starch-binding domain-like 407 505 IPR013784 GO:0030246
Vimu10g02643 656 Pfam Polysaccharide lyase family 4, domain II 432 504 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02643 Vimu-Chr10 37794956 37801528 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02643 73 656 Polysaccharide Lyase AT1G09890 62.862 0.0 753
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02643 K18195 - gmx:100786488 1103.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02643 10 37794956 37801528 Vimu10g02643 10 37794956 37801528 ECH