Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02642 ATGGCGAAACTACTTAGAGTAATTAGCGTGAAGAATAAAATTAATGAGCAGAAGCACATGGCAATCAGAAATGTTGTTATAGAGATCGATATTCTTGATGAGACTTCACATCAGAGATTAACAATGTTGCGCTTCTTCCTATCTCGTAGCCTCAGTATTATAGGTTCCTTTCCCGATGCTGTTTCAAAAGGGGCCATTAGATCCATTCAAGAACCGCCACCCTTTTTATCTTCTTCTAACCACCACCAGCGCCCCCACATGGCTCCTGCACCCTCCCACTTCCTCCTCCTCGCTCTCCTTCTACTCCTCACATACGCAGTACACACCAAAGAAACTCCACCTCCTACTCCCCAACGAATCATTGCACCACCGCCGCCCGACAACGACAGTGATACCTCGCCGCCTTTCAGACCAGGCATAGCGGTGGTCGTATGCGTTTTGACCACCATAATCTCCCTCACCTCGCTCCTCCTTCTTTACATCAAACACTGCAACGGCGGTACCATCCACAGCGGCGGGAGCTCGATTCCGTGGACCGTGGCGCCGTTCTCCGGGAGAAAGAACTCCGGCATTGACCGGTCCGTAGTGGAATCGCTTCCCGTTTTCAGATTCGGAGCGCTGCGGGGACAAAAGGAAGGGCTGGACTGCGCGGTGTGCCTGACGAAGTTCGAGGCGGCGGAGGTTCTCCGGCTGTTGCCGAAATGCAAGCACGCGTTCCACGTCGAGTGCGTGGACACGTGGTTGGACGCGCATTCCACGTGTCCTCTGTGCCGGTACCGCGTGGATCCGGAGGACATTCTTCTGGTGGAGGACACAAAGCCTTTCCGGTGCCAAACTCAGCCACAGCGGAACAGCCAGAACAACAACACGAACCAGGAATGCGCGCGGTCGAATATGGACGTGGAGAAGCAGGAGATTGGGCGGAGGCATTCGTCGGTGGGGGAGAGGGGAACGGAGGAGCAGAGTCGGAGGTGGACGACGTCGTTTAGGAGGTCGTTGGATAGCGCCACATCGAGGAAAAAGAACGAGAGCGTTGGTGTTGTTGGGTTTGGTTGGTTTGTACGTGGCAGAAAAGACGGGATGTTGTTGACGCAGGAAACGGAGAGAGAGGGAGACAGGACAAGCGCGGAACGGAGGTTGGAACACCGGATCATTGTCTCCCCGGGCCCGGACCCGGACCCAGGCCCAGGGAAAATGAAAATGAAAATGAAAATGAAAATGAACGGGGTCCAGCAGAGATGGAGCGACGTGCAAGCTTCGGACCTGCTGTATCTGACGTCGGAGATGATAATGAGCGAGGCGCAATGGAACACGCGCGGAGGAGGAAGACGAAGGGGGACGCGCCGTACAAATGATGATGAGGTTGAGGACAGTTGGAGTGGCAGAGGGATAATAAATTCGAGAAGTGTGTCTGAGATCACGGGATTGAGCAGGTTCTCCAGCAATAGCAATAATAATAACGAGGAGGACACAGAGAGACAGAGAGACAGAGAGTGGGAGCAACAAGGACAAGGACAAGGACATGGAGAGAGAGAAAGAGAAAGAGAAGAGGGTCTGGTTAGAAGTCACACACACATTCCCAAACCCAACCATCGGTACGGTAGCAACTTCCGGCCTCTGCCTTTCTCTTCCATCATCACTCTCTCACAAACAGACAAACCACTGCACTCATTCATGGATCCTCCTTTGTATCTTTGCCTAGCTTAA 1707 0.5319 MAKLLRVISVKNKINEQKHMAIRNVVIEIDILDETSHQRLTMLRFFLSRSLSIIGSFPDAVSKGAIRSIQEPPPFLSSSNHHQRPHMAPAPSHFLLLALLLLLTYAVHTKETPPPTPQRIIAPPPPDNDSDTSPPFRPGIAVVVCVLTTIISLTSLLLLYIKHCNGGTIHSGGSSIPWTVAPFSGRKNSGIDRSVVESLPVFRFGALRGQKEGLDCAVCLTKFEAAEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLVEDTKPFRCQTQPQRNSQNNNTNQECARSNMDVEKQEIGRRHSSVGERGTEEQSRRWTTSFRRSLDSATSRKKNESVGVVGFGWFVRGRKDGMLLTQETEREGDRTSAERRLEHRIIVSPGPDPDPGPGKMKMKMKMKMNGVQQRWSDVQASDLLYLTSEMIMSEAQWNTRGGGRRRGTRRTNDDEVEDSWSGRGIINSRSVSEITGLSRFSSNSNNNNEEDTERQRDREWEQQGQGQGHGEREREREEGLVRSHTHIPKPNHRYGSNFRPLPFSSIITLSQTDKPLHSFMDPPLYLCLA 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02642 568 MobiDBLite consensus disorder prediction 436 460 - -
Vimu10g02642 568 MobiDBLite consensus disorder prediction 488 524 - -
Vimu10g02642 568 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 265 IPR013083 -
Vimu10g02642 568 MobiDBLite consensus disorder prediction 278 297 - -
Vimu10g02642 568 MobiDBLite consensus disorder prediction 475 535 - -
Vimu10g02642 568 MobiDBLite consensus disorder prediction 111 133 - -
Vimu10g02642 568 SMART ring_2 216 257 IPR001841 -
Vimu10g02642 568 CDD RING-H2_EL5-like 215 258 - -
Vimu10g02642 568 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 114 497 - -
Vimu10g02642 568 FunFam RING-H2 finger protein ATL43 191 265 - -
Vimu10g02642 568 MobiDBLite consensus disorder prediction 278 340 - -
Vimu10g02642 568 MobiDBLite consensus disorder prediction 298 327 - -
Vimu10g02642 568 MobiDBLite consensus disorder prediction 445 459 - -
Vimu10g02642 568 MobiDBLite consensus disorder prediction 116 132 - -
Vimu10g02642 568 Pfam Ring finger domain 215 258 IPR001841 -
Vimu10g02642 568 ProSiteProfiles Zinc finger RING-type profile. 216 258 IPR001841 -
Vimu10g02642 568 SUPERFAMILY RING/U-box 210 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02642 Vimu-Chr10 37789942 37792436 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02642 138 478 C3H Transcription Factor Family AT5G05810 47.411 2.01e-78 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02642 K19041 - gmx:100794083 408.297