Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02638 ATGTTCTCAAAGCTTCAACCTCAACACCATGCTTTCCAACACCACCCCTTCCAACTCTCCGCCGAGGACGACAACCGTGCCATCGTCGCCACACCCACTACTGCTCAGAAACCCAACTCCTCCTGCGGTGATGGCGCCACCATCGAAGTGGTACGGCGTCCCAGGGGCCGTCCTCCTGGCTCCAAGAATAAGCCCAAGCCACCTGTCATCATAACCCGAGACCCTGAACCTGCTATGAGCCCCTACATTTTAGAAGTTTCCGGAGGCAGCGACGTCGTTGAGGCCATCGCGCAGTTCAGTCGCCGCAAGAACATGGGCATCTGTGTGCTCACTGGTTCCGGGACTGTAGCCAGCGTCACCCTCCGGCAACCCTCCACCACTCCTGGCGCCACGGTTACTTTTCAGGGCCGTTTCGATATCCTTTCAGTCTCCGCCACCTTCCTTCCGCAGCAATCCGGCGCGTCTCCGGCGGTTCCCAACGGGTTCGCCATCTCGCTCTCTGGACCGCAAGGGCAGATCGTTGGGGGAATGGTTGCAGGCGGGTTGATTGCTGCGGGAACTGTGTTCGTGATCGCGGCTTCGTTCAACAACCCGACGTATCATAGGCTGCCGCCGGAGGATGAGGTCTCTGGTGGCGGAGAAAGCGGGCATGGGCAGGCGGAGTCGTGTGGAATGTCCATGTACAGCTGTCACTTGCCTTCCGATGTGATTTGGGCTCCGACGGCCAGAGCACCACCGCCGCCACCACCTTACTGA 756 0.5979 MFSKLQPQHHAFQHHPFQLSAEDDNRAIVATPTTAQKPNSSCGDGATIEVVRRPRGRPPGSKNKPKPPVIITRDPEPAMSPYILEVSGGSDVVEAIAQFSRRKNMGICVLTGSGTVASVTLRQPSTTPGATVTFQGRFDILSVSATFLPQQSGASPAVPNGFAISLSGPQGQIVGGMVAGGLIAAGTVFVIAASFNNPTYHRLPPEDEVSGGGESGHGQAESCGMSMYSCHLPSDVIWAPTARAPPPPPPY 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02638 251 PIRSF ESCAROLA 2 236 IPR014476 GO:0003680
Vimu10g02638 251 CDD DUF296 81 195 IPR005175 -
Vimu10g02638 251 Gene3D - 80 211 - -
Vimu10g02638 251 MobiDBLite consensus disorder prediction 1 20 - -
Vimu10g02638 251 Pfam Plants and Prokaryotes Conserved (PCC) domain 81 197 IPR005175 -
Vimu10g02638 251 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 26 223 IPR014476 GO:0003680
Vimu10g02638 251 MobiDBLite consensus disorder prediction 201 220 - -
Vimu10g02638 251 FunFam AT-hook motif nuclear-localized protein 80 214 - -
Vimu10g02638 251 ProSiteProfiles PPC domain profile profile. 76 216 IPR005175 -
Vimu10g02638 251 SUPERFAMILY AF0104/ALDC/Ptd012-like 78 207 - -
Vimu10g02638 251 MobiDBLite consensus disorder prediction 31 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02638 Vimu-Chr10 37759456 37760244 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02638 44 247 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 65.351 3.01e-95 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02638 - - gmx:100815772 402.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02638 10 37759456 37760244 Vimu10g02638 10 37759456 37760244 ECH