Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02624 ATGGCACCCAGTTTTGACTGTGTTTCGAGTCTCCTTTGCTCAGAGGACAGCACCGTTTTCGACGAGAGTCATTATGGGGGTACGATGATGGGGGTGTGCGAGGACACGTGGCGTTCCCGGAGGCACCGCTTCGATGAACCGGATGAGTTGCCATTGCTGAGTGATGAGTGCTTGGCGATGATGGTGGAAAGAGAGTGCCAACTCTGGCCTGGTTTGCGTTACTTCAATAAGCTTCAGACTGGAAATTTGGACTGTGGTGCCAGAAAGGAGGCCATTGATTGGATTCACAAGAAGGGAAGAGTTTGGACAATGCAATTGTTGGCTGTGGCGTGTTTAACTCTTGCAGCCAAAGTGGATGAGACAGAAGTCCCAGTGGCTCTTGATTTACAGGTGGGTGAATCAAAGTTTGTATTTGAGGCTAAGACCATCCAGCGAATGGAGCTTCTAGTACTAAGCACATTGAAGTGGAGAATGCAAGCAATCACTCCTTTCACCTTCCTTGATTACTTCCTTTGCAAGATCAATGGTGATCAGAGTCCATTGAAGTCTGCAATCATGCGATCTATCCAACTAATATCAAGCACTGCAATAGGAATTGACTTCTTGGAATTCAAACCATCAGAGATTGCTGCAGCAGTAGCCATGAATGTCATGGGGGAAACCCAAACAGTGGACACAGGGAAAGCAATTTCTGTGCTGATTCAACACGTAGAAAAGGAGAGACTATTGAAGTGCATTAAAATGATGAAAGAGTTGTCATCAAACAGTGGGACTGCGAAGGATTCAAGTGGTTCTGTGACTTGCCTACCCCAAAGCCCAATAGGTGTGCTAGATGCATTGTGCTTCAGCCACAAAAGTGATGACACAAATGCTGCTTCATGTGCTAACTCTTCACATAGTACTCCTGATGCTAAAAGGAGGAAGTTAAACAAAACCTGTGGAGCAGAGCTATTGTAG 957 0.4598 MAPSFDCVSSLLCSEDSTVFDESHYGGTMMGVCEDTWRSRRHRFDEPDELPLLSDECLAMMVERECQLWPGLRYFNKLQTGNLDCGARKEAIDWIHKKGRVWTMQLLAVACLTLAAKVDETEVPVALDLQVGESKFVFEAKTIQRMELLVLSTLKWRMQAITPFTFLDYFLCKINGDQSPLKSAIMRSIQLISSTAIGIDFLEFKPSEIAAAVAMNVMGETQTVDTGKAISVLIQHVEKERLLKCIKMMKELSSNSGTAKDSSGSVTCLPQSPIGVLDALCFSHKSDDTNAASCANSSHSTPDAKRRKLNKTCGAELL 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02624 318 SMART Cyclin_C_2 161 271 IPR004367 -
Vimu10g02624 318 Pfam Cyclin, N-terminal domain 103 158 IPR006671 -
Vimu10g02624 318 Gene3D - 101 159 - -
Vimu10g02624 318 Pfam Cyclin, C-terminal domain 161 260 IPR004367 -
Vimu10g02624 318 PANTHER CYCLINS 94 254 IPR039361 -
Vimu10g02624 318 SUPERFAMILY Cyclin-like 45 158 IPR036915 -
Vimu10g02624 318 CDD CYCLIN_AtCycD-like_rpt2 161 249 - -
Vimu10g02624 318 Gene3D - 160 248 - -
Vimu10g02624 318 SUPERFAMILY Cyclin-like 143 252 IPR036915 -
Vimu10g02624 318 FunFam D6-type cyclin 150 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02624 Vimu-Chr10 37638636 37640608 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02624 61 294 Core Cell Cycle Gene Families AT2G22490 41.697 6.35e-61 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02624 K18810 - gmx:547739 513.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02624 10 37638636 37640608 Vimu10g02624 10 37638636 37640608 ECH