Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02623 ATGGTGTGCCAAGCAGCGAGTCAAACGAGATTTCGGGCGTTAAAACATGAAAGTGGAATTGCCGGGAACTCCACCATTATAGTTAGAGTTATAGCATGTTTTCAACCTCTCAGAGAATGCCAGGTACGTGATATCCCCCTCTGTATAATGGCCAACATTTTCGTTATACTTTACACATGCCATGTTCTGCCAAGAAACATGTTAATAACTGTTAATTTATTTGTTTGGCTATTGTTCAGGCTGAATATTTCCGTCATTTGCTCAAACCTGTCACGTAATTTGCCTTGCTCCGTTTGGATGTTAGGTGATTGTTCTGATAAAATGGGAGAAGATTGTAGAACCTGGATACCAAATCTGCAATTAGGATGGCAATCACCAAATTTGAATCCCCTTGATGTAGGGAAGCTAGGTGGTATTTCTGCAGCCATGAACCCAGCGGTGAATATGGTTTCTGCATATGAGACAATACCAGCTTATGCATCCTCTGCACTACAACCTCGTTTGCAGTTAGGATGTTCCAGTGATCCGCGTGGTTGGTTTTATTGTCTGCCTCGCTTTCGGCAAGAATTTTCCCCTGCTCCGAACGTCACTGTTGAAGGAAAAACCCCTGTTGACCATGAGAGAGGTTTTGAGGACAAAAATGCTCCATTTGGCGAGTCTAGCTCACCACGAAAACAATTTCTCGTCATTGACCAGACTGCTGGTCAAACAACTGTTGTTTATAGTTCTAGGTTTGGAAGTCCTTGTGAGTGCCTTGCTTCTTGGCATTCAAAACTACATGGTGGTAACAATTGGAGGGGGGATGAAACTTGTTTTAGAAGAGATTTGAATTTGAATCGTATGAATGAGCCAACTCTGGCTGACAAGGTGCATGAGAATCATGAAACCAGCATTGAAAGCGAGATGCATGAAGACACAGAAGAAATTAATGCATTGCTTTACTCGGACAGTGATGACTATTCTGCCCAGGATGATGATGATGATGAAGTTACAAGCACTGGGCACTCTCCTAGTACAATGACCACTCATGATGACTGCAAGACCTCTAGGGATGAAACTGTGAATGAAGTTGCAAGCTCTGCAAAGAAAACCAAGAAGAGGAAGTTATTGGATGGTTGTTATGATGACATACAACTCACTGATACTGCCAGTTCTCAGAATATGAACAAATCTTCGGCCACATGTGATGACTCAGAATCAAGATGTTCGAGTACCAAAAACGGCGGATCTTCTAGCAACAAGAAGATGAAAAAGGAGAAGATTCAAGATGTCCTCAGCATTCTGCAGAGCATAATTCCTGGAGGGAAAGATAAAGGCCCGGTTATGCTCCTTGATGATGCAATACGCAGCTTGAAATCATTGAAACAGAAGGCTCAGGCACTCGGACTTGATGCCTTGCATTGTGCAAGGAAAGACGGGAAGTGTTCAGTGTAG 1434 0.4296 MVCQAASQTRFRALKHESGIAGNSTIIVRVIACFQPLRECQVRDIPLCIMANIFVILYTCHVLPRNMLITVNLFVWLLFRLNISVICSNLSRNLPCSVWMLGDCSDKMGEDCRTWIPNLQLGWQSPNLNPLDVGKLGGISAAMNPAVNMVSAYETIPAYASSALQPRLQLGCSSDPRGWFYCLPRFRQEFSPAPNVTVEGKTPVDHERGFEDKNAPFGESSSPRKQFLVIDQTAGQTTVVYSSRFGSPCECLASWHSKLHGGNNWRGDETCFRRDLNLNRMNEPTLADKVHENHETSIESEMHEDTEEINALLYSDSDDYSAQDDDDDEVTSTGHSPSTMTTHDDCKTSRDETVNEVASSAKKTKKRKLLDGCYDDIQLTDTASSQNMNKSSATCDDSESRCSSTKNGGSSSNKKMKKEKIQDVLSILQSIIPGGKDKGPVMLLDDAIRSLKSLKQKAQALGLDALHCARKDGKCSV 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02623 477 MobiDBLite consensus disorder prediction 318 361 - -
Vimu10g02623 477 MobiDBLite consensus disorder prediction 344 361 - -
Vimu10g02623 477 MobiDBLite consensus disorder prediction 197 224 - -
Vimu10g02623 477 MobiDBLite consensus disorder prediction 385 417 - -
Vimu10g02623 477 MobiDBLite consensus disorder prediction 385 411 - -
Vimu10g02623 477 Coils Coil 444 464 - -
Vimu10g02623 477 PANTHER TRANSCRIPTION FACTOR BHLH145 115 464 IPR037546 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02623 Vimu-Chr10 37621754 37623532 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02623 215 456 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G09460 37.945 4.62e-25 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02623 - - pvu:PHAVU_009G038200g 607.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01974 1 26334628 26335764 Vimu10g02623 10 37621754 37623532 PCT