Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02621 ATGGGTTACCTCTCTTGCAATGCCCAATCTGCAATCGCCACCTGCGACCCTCACTTCAAGAAGCACAAACCCCTCCCTGCCAAACCAATCCGCCACTTCAACTACGCCGATATCTCCGCCGCAGCTTCTGGCTTCTCCGCCGATACCTTTCTCGGCAAAGGCAGCCATGGCAGAGTCTACAAAGCTACCCTCGACGGCGGAAAGCTCCTTGCCGCTGTCAAAACAACGAAACTGCTCTCTGCTTCCAAGAACCACTCCACTAAATGCACCGGCTGCGGCAACTGCACCAGTCCCGTGGAGAACGAGATCGAGATCCTTTCTCAAGTTCCGAGCCCCCGCGTGGTGAACCTCATCGGCTTCAGCACTGACCCAGACGGTAACAAATTAATCGTAGTTGAATACATGCCCAACGGTTCGCTCCACGATCTATTACATTCTGTTAGAAAACCGCCCGGTTGGAACCGGAGGATCCGGTTCGCGGTTCAGGTTGCGAAAGCGGTTCGCGAATTGCACTCTGCCAACCCTCCCGTTATTCACCGCGACGTTAAGTCTTCCAATGTTTTAATTGACGAGAGATGGAACGCGAGGCTCGGTGACTTCGGCCTTGCGTTAAGGGGACACGTGGAGGACGTTCGCGTCAAGTGCACGCCGCCCGCGGGGACGTTGGGGTACCTCGACCCGTGCTATCTGGCGCCGGAGGATCTCAGCGCCAAGAGCGACGTCTTCAGCTTCGGGATCTTACTTCTGGAGATCATCAGCGGCCGGAACGCCATCGACGTCAATTACAGCCCTCCCTCTATTGTGGACTGGGCGGTGCCCCTGATCAAGCTCGGCGACTTCGCCGGAATCTGCGACCGCCGGATCGGAACACCGACGGACCCCGCCGTGGTGCGGCAGCTCGCGGTGCTTGCTGCCAGATGCGTGAGGTCGAAGGCCGAGAAGCGGCCGTCCATGACGGAGGTTGTGGAGTGTCTGAATCTGGCAAGGAAGAGGATTCGCGCGTCCCCGGTATGGATGTCTCTGCGGCGGCGCGTGGCGCGTATGGAGAGCGCGGTGCCGGTGGTGGCGTGGGAGGAGTGTGATGATAACAGTATTAATGATTGTGATAGGAGTGAGAAATTTGTGAGCATGGTGAAAGGTGGGAGTGGGAGTGGGAGCAGGAGGAAGGGGAAAGTATCCAGTGTGTGGGGTGTAGGGTATGGGAATGAAGCGTCCAATAATAATAAAGTGATAAGGTCAAAGTCCATTGGTTCTTGTTCTGGTTCGGTGAGAGGGAGCTGGGTTAAAATGCAGGCACAGCAAAGCGAGCAGGGATTTGGGAGGAGGAAGGTGAGGTTAAAAAAGTCAAAATCTTTGGGGGTTTTGCAAGGTTCTGTACTTTCACATTACAGTGAGAATAATAACAGTTATTATAGTTATAATAATAATAAGAAGAAGAAGAAGAAGAATAATGGTGATGATGATGATGATGTATCAGTAGTAGTAATTGGGTCTGCAATGGCAAAGTTGGTTGTTACAGAAAAGTCAGAAAAGAAAATGGTGGAAAAGCCGTTAGTGAAATTGCATGATGAGAGTGGCAGCACATGTGGGAGTGGAAAAGAAGATTAA 1608 0.5286 MGYLSCNAQSAIATCDPHFKKHKPLPAKPIRHFNYADISAAASGFSADTFLGKGSHGRVYKATLDGGKLLAAVKTTKLLSASKNHSTKCTGCGNCTSPVENEIEILSQVPSPRVVNLIGFSTDPDGNKLIVVEYMPNGSLHDLLHSVRKPPGWNRRIRFAVQVAKAVRELHSANPPVIHRDVKSSNVLIDERWNARLGDFGLALRGHVEDVRVKCTPPAGTLGYLDPCYLAPEDLSAKSDVFSFGILLLEIISGRNAIDVNYSPPSIVDWAVPLIKLGDFAGICDRRIGTPTDPAVVRQLAVLAARCVRSKAEKRPSMTEVVECLNLARKRIRASPVWMSLRRRVARMESAVPVVAWEECDDNSINDCDRSEKFVSMVKGGSGSGSRRKGKVSSVWGVGYGNEASNNNKVIRSKSIGSCSGSVRGSWVKMQAQQSEQGFGRRKVRLKKSKSLGVLQGSVLSHYSENNNSYYSYNNNKKKKKKNNGDDDDDVSVVVIGSAMAKLVVTEKSEKKMVEKPLVKLHDESGSTCGSGKED 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02621 535 PANTHER OS01G0253100 PROTEIN 24 328 - -
Vimu10g02621 535 Pfam Protein tyrosine and serine/threonine kinase 49 325 IPR001245 GO:0004672|GO:0006468
Vimu10g02621 535 FunFam Serine/threonine-protein kinase-like protein 135 339 - -
Vimu10g02621 535 ProSiteProfiles Protein kinase domain profile. 45 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02621 535 SUPERFAMILY Protein kinase-like (PK-like) 26 325 IPR011009 -
Vimu10g02621 535 ProSitePatterns Protein kinases ATP-binding region signature. 51 74 IPR017441 GO:0005524
Vimu10g02621 535 Gene3D Phosphorylase Kinase; domain 1 8 134 - -
Vimu10g02621 535 MobiDBLite consensus disorder prediction 470 489 - -
Vimu10g02621 535 MobiDBLite consensus disorder prediction 516 535 - -
Vimu10g02621 535 Gene3D Transferase(Phosphotransferase) domain 1 135 338 - -
Vimu10g02621 535 SMART serkin_6 45 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02621 535 FunFam Serine/threonine-protein kinase-like protein 8 134 - -
Vimu10g02621 535 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02621 Vimu-Chr10 37592660 37594267 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02621 31 336 Receptor kinase-like Gene Family AT3G59420 40.193 2.05e-67 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vimu10g02621 PK_Tyr_Ser-Thr 1.5e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02621 - - gmx:100799382 755.747