Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02620 ATGGAATTTGACGACCACGAAGACCAGGAGGAGGAAGAAGAAGAAGAAGAGGAAGAGGACGAAGAAGAGGAAATGGGATTCTCTGTGGCGGCGCCGGGTTACGATTCCTTTGGAAACGCAGCGCTCAGGTCTAAAATGACCGCAGCCGAGGGACTTCCGGCCACCGTTAACTCTGGTCGCAAAGGCAGCTCCTCGGGGACGGGAAGATACAGAGAATGTCAGAAGAATCATGCCGTCAGTATCGGCGGTCACGCTGTCGATGGCTGCTGCGAGTTCTTGGCCGCAGGAGAGGAAGGCACGCTGGAGGCCGTAATTTGCGCGGCCTGTAATTGCCACCGCAATTTTCACCGCAAGGAGATCGACGGCGAAATCAGCCCTTACCAACTGCGCTCACAGCCGCAGCCGCAACCGCAGCCGCTGCATCCTCAGTATCACCACCAATTCTCCCCTTACTACCACCGCGGGCCACCACCTTCCTCCGCGGGATACCTCCACCCCCACCACCTGTTAACCACTCCGGTATCGCAGCACCGGCCTTTGGCTCTACCACCGCTGGCTTCGGGAGGAGTGTTCAGTAGAGAAGAGGAGGACATGTCAAACCCCAGCTCGAGCGGCGGCGGAGGTGGCGGTTTTGGTGGTGGTGGTGGTAGTGGCAGTGGAACGAAGAAGAGGTTTAGGACAAAATTCACGCAGGAGCAGAAGGATAAGATGCTGGCATTTGCGGAGAAGCTAGGGTGGAGAATTCAGAAGCACGACGAAGGTGCCGTGGAACAATTCTGCGCTGAAACTTGTGTGAAGAGACACGTGCTGAAGGTCTGGATGCACAATAACAAACACACTCTTGCTAATTCAGAGCAACGTTCAGCTGGGAATGGATCGAATCACTTGAACAGTTCCACAATAATTGAGAATTCTGAACTCTCTTAA 927 0.548 MEFDDHEDQEEEEEEEEEEDEEEEMGFSVAAPGYDSFGNAALRSKMTAAEGLPATVNSGRKGSSSGTGRYRECQKNHAVSIGGHAVDGCCEFLAAGEEGTLEAVICAACNCHRNFHRKEIDGEISPYQLRSQPQPQPQPLHPQYHHQFSPYYHRGPPPSSAGYLHPHHLLTTPVSQHRPLALPPLASGGVFSREEEDMSNPSSSGGGGGGFGGGGGSGSGTKKRFRTKFTQEQKDKMLAFAEKLGWRIQKHDEGAVEQFCAETCVKRHVLKVWMHNNKHTLANSEQRSAGNGSNHLNSSTIIENSELS 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02620 308 Pfam ZF-HD protein dimerisation region 69 120 IPR006456 -
Vimu10g02620 308 Gene3D - 211 285 - -
Vimu10g02620 308 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 69 120 IPR006456 -
Vimu10g02620 308 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 49 281 - -
Vimu10g02620 308 MobiDBLite consensus disorder prediction 1 26 - -
Vimu10g02620 308 MobiDBLite consensus disorder prediction 1 36 - -
Vimu10g02620 308 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 70 119 IPR006456 -
Vimu10g02620 308 MobiDBLite consensus disorder prediction 128 223 - -
Vimu10g02620 308 Coils Coil 3 23 - -
Vimu10g02620 308 MobiDBLite consensus disorder prediction 281 308 - -
Vimu10g02620 308 NCBIfam homeobox domain, ZF-HD class 222 278 IPR006455 -
Vimu10g02620 308 FunFam Zinc-finger homeodomain protein 2 215 283 - -
Vimu10g02620 308 SUPERFAMILY Homeodomain-like 209 280 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02620 Vimu-Chr10 37580938 37582116 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02620 19 281 ZF-HD Transcription Factor Family AT4G24660 48.699 1.33e-66 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vimu10g02620 ZF-HD_dimer 1.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02620 - - pvu:PHAVU_009G037900g 518.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02620 10 37580938 37582116 Vimu10g02620 10 37580938 37582116 ECH
Vimu1g01968 1 26182408 26187506 Vimu10g02620 10 37580938 37582116 PCT