Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02616 ATGGCACTCTCGCAATTGGGGCGCGACCTCATCTGGTTCCCATGCACTTCCTTCGAGTGCATTCTCTGCGAAGGCAAATTCAACGCTACAACACCCCTCAACGTCACGCGCTCCCACCGTGTCTCCTGCCAATCCCTTGCATGCTCCTCTATGTCCTCCCATGACCTTTGCGCAATTGCACGTTGTCCTCTCGACAGTATCGAAACCTCTGATTGCTCTTCTACCACCTGTCCACCTTTCTACTGTGCTTACGGAGATGGAAGCTTCATCGTGCGCCTTTACCGCGATTCTCTATCCATGTCCTCTCTTTTCCTTAAAAACTTCACCTTCGGTTGCGCCCACACCGCACTCGCCGAACCCTCCGGCGTTGCAGGTTTCGGTCGGGGCTTGTTGTCACTCCCTGCGCAACTTGCTACCCTTTCTCCGAACCTCGGTAACCGTTTTTCTTACTGTCTGGTTTCTCACTCTTTCGATCAACAACGAGTTCGCAAACCGAGTCCACTCATTCTCGGCTGCTACGACGATTCCGCAGGGGGTAGTGAATTTGTTTACACATCCATGCTTCGAAACCCGAAGCATCCTTATTTCTATTGCGTTGGACTTGCCAAAATCTCTATCCGGAAGAAGACTATTCCGGCGCCGGAGATGCTACGAAGGGTGAACCGCAGAGGGGACGACGGCGTGGTTGTTGACAGCGGAACCACGTTCACAATGCTGCCTGCGAGTTTGTATAACTCGGTGGTGAGTGAGTTTGATCGGCGAGTGGGGCGAGTTCAGAAAAGCCCGTGTAAGTGGGGCAAGATATCAAGTTCCATCTTAGAGAAAGTTTGCAGTGACTCTCCGAAAATGAACGACGCTGATGTCTCTAAGCAAATCCAGCAGATGGTGCGGTTCATCCGCCAGGAAGCAGAGGAAAAAGCTAACGAGATCTCTGTCTCCGCCGAAGAGGAATTCAATATCGAGAAGCTTCAGTTAGTTGAAGCCGAAAAGAAGAAGATCAGGCAAGATGAGTACTCGATGCAGCTGAATGCCTCTCGAATTAAAGTTCTTCAAGCTCAAGATGATGTGATCAGTTCCATGAAAGAAGCTGCTTCCAAGGAACTTTTGAGTGTGAGTCATCATCATCATTTGACTTTGACTCATCATGATCATGTGTACAGAAACCTTTTGAAAGATCTCATTGTTCAGTGTTTGCTAAGACTGAAAGAACCTTCTGTCTTATTGAGATGTCGGAAAGAGGACCTACACTTGGTAGAGCATGTGCTGGATTCTGCTGCACAAGAGTATGCTGATAAAGCAAATGTTGAGCCCCCACAGATCATTGTTGACAACCAAGTCTATCTTCCACCTGGACCCAGTCATCACAATGCTCATGATATCTACTGCTCTGGTGGGGTGGTTCTGGCTTCTCGTGATGGAAAGATTGTGTGTGAGAATACTCTTGATGCACGACTGGATGTAGTGTTCCGTAAAAAGCTTCCTGAG 1485 0.4882 MALSQLGRDLIWFPCTSFECILCEGKFNATTPLNVTRSHRVSCQSLACSSMSSHDLCAIARCPLDSIETSDCSSTTCPPFYCAYGDGSFIVRLYRDSLSMSSLFLKNFTFGCAHTALAEPSGVAGFGRGLLSLPAQLATLSPNLGNRFSYCLVSHSFDQQRVRKPSPLILGCYDDSAGGSEFVYTSMLRNPKHPYFYCVGLAKISIRKKTIPAPEMLRRVNRRGDDGVVVDSGTTFTMLPASLYNSVVSEFDRRVGRVQKSPCKWGKISSSILEKVCSDSPKMNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQDEYSMQLNASRIKVLQAQDDVISSMKEAASKELLSVSHHHHLTLTHHDHVYRNLLKDLIVQCLLRLKEPSVLLRCRKEDLHLVEHVLDSAAQEYADKANVEPPQIIVDNQVYLPPGPSHHNAHDIYCSGGVVLASRDGKIVCENTLDARLDVVFRKKLPE 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02616 495 SUPERFAMILY Acid proteases 6 257 IPR021109 -
Vimu10g02616 495 ProSiteProfiles Peptidase family A1 domain profile. 1 430 IPR033121 -
Vimu10g02616 495 PANTHER ATPASE H+-TRANSPORTING V1 SUBUNIT E1A-RELATED 283 495 IPR002842 GO:0033178|GO:0046961|GO:1902600
Vimu10g02616 495 Pfam Xylanase inhibitor N-terminal 5 170 IPR032861 -
Vimu10g02616 495 Gene3D Acid Proteases 3 252 IPR021109 -
Vimu10g02616 495 CDD pepsin_A_like_plant 70 252 IPR034161 -
Vimu10g02616 495 Pfam Xylanase inhibitor C-terminal 197 285 IPR032799 -
Vimu10g02616 495 Gene3D - 359 495 IPR038495 -
Vimu10g02616 495 Pfam ATP synthase (E/31 kDa) subunit 298 495 IPR002842 GO:0033178|GO:0046961|GO:1902600
Vimu10g02616 495 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 228 239 IPR001969 GO:0004190|GO:0006508
Vimu10g02616 495 SUPERFAMILY V-type ATPase subunit E-like 355 495 - -
Vimu10g02616 495 Gene3D - 276 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02616 Vimu-Chr10 37544411 37550076 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02616 283 494 Primary Pumps ATPases(2) AT4G11150 69.469 1.33e-103 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02616 - - pvu:PHAVU_002G062600g 444.121