Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02613 ATGACGAGGGCGAAGATAAAGATAAAGAAAATCGACAACATAACGGCTAGGCAAGTAACATTTTCTAAGAGAAGGCGAGGGTTGTTCAAGAAAGCTGAAGAGCTATCTGTGCTGTGTGATGCGGATGTTGGTCTCATAGTTTTCTCATCTACCGGGAAGCTCTTTGATTATAGCAGTTCCAGTATGAATGACATAATTACGAAGTATAATACGCATTCCCCTGGCATGGACAAATTGGACAGGCCATCACTAGAACTGCAGGTTGTACAAAAAAATATTTGGATGAAAGGCGATGATCTTCAAGGACTAAGCCTAAATGAGTTGCAGCAACTGGAGAAAAAACTTGAAAGTGGACTCGACCGTGTGCTTGAGATAAAGGAAAAGCAGATGATGGGTCAGATTTCTGAACTTCAGAAAAAGGTAGCGGAGACGGAGATGGAGGCTATGCTGCGTAAAGCAACAATGCGTTTTTTGATGGACTCAAACATGGGAATGCAAGAAGAAGGTGTTTCATTAGAGTCTACAAACAACGTTAGCAGTTGCATCAGTGACCCTCCTGTTGAAGATGATTCCTCGGACACATCTCTCAAGTTAGGGTTACCCTTCTCTGACTGA 615 0.426 MTRAKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDADVGLIVFSSTGKLFDYSSSSMNDIITKYNTHSPGMDKLDRPSLELQVVQKNIWMKGDDLQGLSLNELQQLEKKLESGLDRVLEIKEKQMMGQISELQKKVAETEMEAMLRKATMRFLMDSNMGMQEEGVSLESTNNVSSCISDPPVEDDSSDTSLKLGLPFSD 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02613 204 Coils Coil 108 147 - -
Vimu10g02613 204 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vimu10g02613 204 Gene3D - 14 91 IPR036879 GO:0003677|GO:0046983
Vimu10g02613 204 ProSiteProfiles K-box domain profile. 69 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu10g02613 204 Pfam K-box region 94 148 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu10g02613 204 CDD MADS_MEF2_like 12 73 IPR033896 GO:0000977|GO:0045944
Vimu10g02613 204 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Vimu10g02613 204 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vimu10g02613 204 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vimu10g02613 204 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vimu10g02613 204 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vimu10g02613 204 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vimu10g02613 204 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 148 - -
Vimu10g02613 204 FunFam Transcription factor, MADS-box 13 83 - -
Vimu10g02613 204 MobiDBLite consensus disorder prediction 169 189 - -
Vimu10g02613 204 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vimu10g02613 204 MobiDBLite consensus disorder prediction 169 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02613 Vimu-Chr10 37525374 37533338 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02613 1 202 MADS-box Gene Family AT2G22540 49.791 1.95e-68 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vimu10g02613 K-box 6.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02613 - - gmx:100776749 286.189