Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02612 ATGAACACAAACAGAGCCGAAGCCGAACGCTTGCTCGCCATCGGCGACAAGCTGCTCCAGAGCCGTGACCTGAGCGGCTCCCGCGACTTCGCCATTCTCGCGCAGGAAGCCGAGCCGCTCCTCGAAGGCTCCGACCAGATCCTCGCCATCGTCGACGTCCTCGTCGCCGCCGAGAAGCCGATCTACAACAACCACCTCGATTTGTACGCCATTCTCCAAGTGGATCGCACGTGCCAGAACCTCGATCTCATCAGAAAACAGTACCGCAGACTCGGTCTTCTCCTTCACCCTGACAAGAACCCTTTCTCCCTCGCCGACCACGCTTTCAAGCTTGTCACCGATGCATGGGCCGTTTTATCCGACCCGGTTCAGAAAGCCTTGTACGACCGAGACGTCGCCGGTTCGGTCGAAACGGCGAGTTTCTGGACTGCATGTCCGTACTGTTACTTTCTCTTCGAGTACCCTGTGGATTGCGAGGGTTGTTGCCTGAGGTGCCAGAATTGCGAGAGGTCGTTCCACGGGCTTTCGATTCCGTCGCTCCCTCCGCTCGTGCCGGGCCAGGAGGCCTATTATTGTAACTGGGGGTCCTTGCCCATGGGCTTTGTGTTTGGAACTTTGGGCTCCAATGGGCCTGGGTCTGTGGCTGAGAATGGCCCGGAGGCTGTTTCGAATGGGGCTGCTTCGGAGTTGGGTTCTCGTTCTGCGCGGAAGAAGGGAAGGCCTCAAAAGGGGGTGTGA 738 0.5854 MNTNRAEAERLLAIGDKLLQSRDLSGSRDFAILAQEAEPLLEGSDQILAIVDVLVAAEKPIYNNHLDLYAILQVDRTCQNLDLIRKQYRRLGLLLHPDKNPFSLADHAFKLVTDAWAVLSDPVQKALYDRDVAGSVETASFWTACPYCYFLFEYPVDCEGCCLRCQNCERSFHGLSIPSLPPLVPGQEAYYCNWGSLPMGFVFGTLGSNGPGSVAENGPEAVSNGAASELGSRSARKKGRPQKGV 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02612 245 MobiDBLite consensus disorder prediction 214 245 - -
Vimu10g02612 245 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 210 - -
Vimu10g02612 245 Pfam DnaJ domain 67 129 IPR001623 -
Vimu10g02612 245 Gene3D DnaJ domain 55 144 IPR036869 -
Vimu10g02612 245 ProSiteProfiles dnaJ domain profile. 67 132 IPR001623 -
Vimu10g02612 245 ProSitePatterns Nt-dnaJ domain signature. 109 128 IPR018253 -
Vimu10g02612 245 PRINTS DnaJ domain signature 104 124 IPR001623 -
Vimu10g02612 245 PRINTS DnaJ domain signature 69 87 IPR001623 -
Vimu10g02612 245 PRINTS DnaJ domain signature 88 103 IPR001623 -
Vimu10g02612 245 CDD DnaJ 67 121 IPR001623 -
Vimu10g02612 245 SMART dnaj_3 66 124 IPR001623 -
Vimu10g02612 245 SUPERFAMILY Chaperone J-domain 63 143 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02612 Vimu-Chr10 37513686 37515713 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02612 2 207 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 53.947 6.94e-82 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02612 - - gmx:100802055 420.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02612 10 37513686 37515713 Vimu10g02612 10 37513686 37515713 ECH
Vimu1g01667 1 16728309 16729360 Vimu10g02612 10 37513686 37515713 PCT