Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02608 ATGCTCATCTGCAGGGATTTAGATCCACTAGTCCTACCATCAGAAACTAGTCAGGCATTGAAACAACGGCTGCTGAGTTTTGTAAGATCTTTGTCAACCGTGCTTACCATTGCTCACTGTTCTTCAAGCTTAATTCAACAGGCACAAAAACTTTGTATGGAGGCAAATGACTCCAGTGATGAAAGAAATATGCGCATTGATTTTACTGGGAAAGCTGTATATACTGCAATTTGGGTTGCTGCTGTGTCGTTGTTGATGGAGTTACTGGGTATCTCAACACAGAAGTGGTTGACTGCTGGTGGTTTGGGCACAGTATTGATTTCCCTTTCAGGTCGCGAGATATTTACAAACTTCCTTTCGAGTATAATGATTCATGCAACTCGACCATTTGTTGTGAATGAGCGGATTCAAACAAAAATTAAAGGATATGAGGTTACTGGTAAAGTTGAGCATGTAGGCTGGTGGTCACCAACAAGAATTAGAGGTTCTGATTGTGAAGCAGTTCATATTCCTAATCACAATTTGAGTATAAATGTTGTGAGGAATCTTAGTAAGAAATCTCATTGGCGTATAAAGACTCACCTGGCAATCAGTCACCTGGATGTTAACAAGATTAATAGTATAATAGCTGATATGCGCAAGGTTTTGGCCAAAAATCCTCAAGTAGAGCAGAGAAAATTGCACAGAAGGGTTTTTCTAGAGAACATTGATCCAGAAAATCAGGCTCTTATGAGCCTTTTGGAATTGACTAACCACACTAACTACATATGTGACGTCTGGTCTAGTGACAATGAGGTAATTAAGTCCACGATATCTTCTAGGGTCTTTCGATGGCTCCCCTTGACTTGGAAAAAGCTTCAAGGATCCATTGGACTATCTCTAGGGCAACAATCAATCATACTAGTCTTGGTCAAAATGTATAAATCATTCTTTCGCTGGGAAATGGCAATGCTAGATGGGGATTGTGCAACTTCAAAGCCAAGAAAGTACCAAAGAAGACCCAAATCCTTGGCCAATGGTGGCAAGAAAAAGATAGACAGGGGTGGCACTCTCAATGGTTCCCATGTCAGTTGGTGGTATGTGAGAAGTGGAGGTGGAGTAGGAGCTACTACTGGAACAATAGTGGAACCTTTAGAGACTGATGAAGGCATGTGGTTAATCAGAGGACATGCAGGAAGAACACCCCTGAGAAATGTAGAGGAACATCGGAGTGAAGAGCAAGAGTGA 1227 0.4148 MLICRDLDPLVLPSETSQALKQRLLSFVRSLSTVLTIAHCSSSLIQQAQKLCMEANDSSDERNMRIDFTGKAVYTAIWVAAVSLLMELLGISTQKWLTAGGLGTVLISLSGREIFTNFLSSIMIHATRPFVVNERIQTKIKGYEVTGKVEHVGWWSPTRIRGSDCEAVHIPNHNLSINVVRNLSKKSHWRIKTHLAISHLDVNKINSIIADMRKVLAKNPQVEQRKLHRRVFLENIDPENQALMSLLELTNHTNYICDVWSSDNEVIKSTISSRVFRWLPLTWKKLQGSIGLSLGQQSIILVLVKMYKSFFRWEMAMLDGDCATSKPRKYQRRPKSLANGGKKKIDRGGTLNGSHVSWWYVRSGGGVGATTGTIVEPLETDEGMWLIRGHAGRTPLRNVEEHRSEEQE 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02608 408 SUPERFAMILY Sm-like ribonucleoproteins 114 184 IPR010920 -
Vimu10g02608 408 Pfam Mechanosensitive ion channel 71 234 IPR006685 GO:0016020|GO:0055085
Vimu10g02608 408 Gene3D - 129 182 IPR023408 -
Vimu10g02608 408 Gene3D - 19 128 - -
Vimu10g02608 408 MobiDBLite consensus disorder prediction 325 349 - -
Vimu10g02608 408 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 245 IPR045042 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02608 Vimu-Chr10 37489769 37495426 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02608 1 256 Mechanosensitive Ion Channel Family AT5G10490 71.923 5.53e-133 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02608 K22047 - gmx:100797302 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02608 10 37489769 37495426 Vimu10g02608 10 37489769 37495426 ECH