Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02606 ATGGTCTGTCCAGGTTCAACGCAGCTGTCTCATGACGTTAGGCTCAACAGTAATATTGGATTATGTGGTTTTCATCGTCATGATCGGATGGGGGTTGGTCAATTACATTTGGTCACCATAAATCTTTCACCGGGTAGCTTGAAGCAAGACACTTCGGCACTCCATCTTTTAAGTAGACTACATGCTCCAATAAGGCACCTGCCTTCCAAATGTAATGTTTTTATATGTCGGTCTGTCCTAATGCCGGGTGGAGGGAGTGGAACTCCTCTGATGAAATCTGCTGGTGTTATTTTAACAAGGTCATATGATGCTTTACAAAGGAACCCCGTTTTGCTTCAATTGATCCCAGCCCTTGGCATCATTGCCTTTGCTGCTTGCGGTCTTGAGCCACTCATTCGACTTAGCAGGGTTTTGTTCCTTCAAAGAACTGACAGCAGTTGGAAGAAAAGTAGTTCGCGATGTATTATGACATCTTATTTTCAGCCATTGTTGTTATGGATTGGGGCAATGCTCATATGCAGGGCATTAGATCCAGTAGTCCTACCATCTAAGTCCAGCCAGGTTGTGAAGCTGCGGCTTCTGAATTTTGTGAGATCTTTGTCAACGGTGATTTCGTTTGCTTATTGTTTATCAAGTTTAATTCAACAAGCACAAAAATTCTTTGTGGAGGCAAATGACTCCAGTGGTTCAAGAAATGTGGCCTTTGATTTGGCTGGGAAGGGAGTATATGCTACTGTTTGGGTTGCTGCCGCATCATTGTTTATGGAGCTGTTAGGTTTCTCCACACAGAGGTGGTTAACTGCTGGTGGTTTGGGCACTGTATTGCTCACTCTGGCAGGTCGTGAGATATTTACAAACTTTCTGTCAAGCATAATGATCCATGCCACTCGGCCATTTGTTGAGAACGAGTGGATTCAAACGAAAATTGAAGGATACGAGGTTTCTGGCACAGTAGAGCATGTAGGGTGGTGGTCACCAACCATTGTTAGAGGCGATGATCGTGAGGCAGTTCATATTCCTAACCACAAGTTTACTGTAAATATTGTGAGAAATCTGACCCAGAAATCTCATTGGCGTATCAAGACTTACATTGCTATCAGTCACTTGGATGTTAACAAAATTAATAATATTGTAGCTGATATGCGCAAGGTTTTGTCAAAGAATCCTCAAGTAGAGCAGCAAAAATTGCACAGAAGGGTCTTTTTGGAGAATGTTAATCCTGAAAATCAGGCTCTTATGATATTAATATCTTGCTTTGTGAAAACTTCTCATTTTGAAGAGTACCTCTGTGTTAAGGAGGCAATCCTTTTGGATCTTCTCAGAGTCGTCAGTCATCATCGCGCCAGGCTAGCCACTCCCATCCGCACAGTTCAGAAAATATACAGTGAGGCTGCCTCGGAAAATATACCTTTTGGGGACTCAATTTTCACTAGATCTAGAGCTGCAAATCGCCCATATCTACTGATAGAACCACCATATAAAGTTCATGGTGAAGATAAAGTTAAACCCTCAACCCGTGCAGTTCGCACAAATGAGGAAAAGGATTCCAGGATTGATGAAATCATGGCATCTGACACCAAAGGAGATGAAAATTTTGGAGCAACATCTACCTCGTCAGCTGATGTAAACAACTCCAGGGATAAATCCGAGTCATTTTCTGAATCACAGACTAAAAGCGAAAATTCAGTAGATGAACGAAAGGGAAGTACAGGTCCTGTATCTAGAATCCAGGATCAAAGTACTGAGCTTGAATCCTCTCCTGTTGCTACCCATGAGACCATTGCTGCTACTTCACAGTCAAAGCAAGATGAAGAGAAATCTTCTGTCTCTTCGTCATCGGTTAGACCTTCCCTGGAAGAGAACATTTTTCTTGGGGTTGTCTTAGAAGACTCAAAACGAACACTTCCAATCGAAGAAGAAAAGACTCCATCTCCCATGCCCACGGATTCACAAGAATTTGCTGTCCAACGGAACGGTGGTGGACCTCCTGCTAGCAAGGATAAGAAGGATGGTCCGTCTTCATTTCCAACTGATAAACAGAATGACTAG 2049 0.428 MVCPGSTQLSHDVRLNSNIGLCGFHRHDRMGVGQLHLVTINLSPGSLKQDTSALHLLSRLHAPIRHLPSKCNVFICRSVLMPGGGSGTPLMKSAGVILTRSYDALQRNPVLLQLIPALGIIAFAACGLEPLIRLSRVLFLQRTDSSWKKSSSRCIMTSYFQPLLLWIGAMLICRALDPVVLPSKSSQVVKLRLLNFVRSLSTVISFAYCLSSLIQQAQKFFVEANDSSGSRNVAFDLAGKGVYATVWVAAASLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSIMIHATRPFVENEWIQTKIEGYEVSGTVEHVGWWSPTIVRGDDREAVHIPNHKFTVNIVRNLTQKSHWRIKTYIAISHLDVNKINNIVADMRKVLSKNPQVEQQKLHRRVFLENVNPENQALMILISCFVKTSHFEEYLCVKEAILLDLLRVVSHHRARLATPIRTVQKIYSEAASENIPFGDSIFTRSRAANRPYLLIEPPYKVHGEDKVKPSTRAVRTNEEKDSRIDEIMASDTKGDENFGATSTSSADVNNSRDKSESFSESQTKSENSVDERKGSTGPVSRIQDQSTELESSPVATHETIAATSQSKQDEEKSSVSSSSVRPSLEENIFLGVVLEDSKRTLPIEEEKTPSPMPTDSQEFAVQRNGGGPPASKDKKDGPSSFPTDKQND 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02606 682 MobiDBLite consensus disorder prediction 529 546 - -
Vimu10g02606 682 MobiDBLite consensus disorder prediction 566 618 - -
Vimu10g02606 682 Pfam Mechanosensitive ion channel 242 447 IPR006685 GO:0016020|GO:0055085
Vimu10g02606 682 MobiDBLite consensus disorder prediction 547 565 - -
Vimu10g02606 682 Gene3D - 193 297 - -
Vimu10g02606 682 MobiDBLite consensus disorder prediction 498 526 - -
Vimu10g02606 682 SUPERFAMILY Sm-like ribonucleoproteins 283 353 IPR010920 -
Vimu10g02606 682 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 671 IPR045042 -
Vimu10g02606 682 MobiDBLite consensus disorder prediction 498 682 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02606 Vimu-Chr10 37466613 37472955 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02606 9 655 Mechanosensitive Ion Channel Family AT1G58200 55.689 0.0 721
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02606 K22047 - gmx:100777815 1113.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02606 10 37466613 37472955 Vimu10g02606 10 37466613 37472955 ECH