Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02599 ATGTCGGAGAAGAAGACCAGAGTGTCTTTTACGGAAAAAGATGCTGTCGCGCTGATGCAGAGGTACGACCCAACTACAGTGTTCATCTTACTTCAAGAAGTTGCGCATTACGCTAAGCCGAAGATTGATTGGAGCGAGTTGGTGAAGAAAAGCGCAACTGGGATTTCTAATGTTAGGGAATATCAAATGCTGTGGCGGCATTTGGCCTATCGGCATTCTTTGCCGGAAAATTTTGAAGTTGGGGCTGAACCTCTGGATGATGACAGTGACTTAGAGTGTGAGCTAGAAGCATTACCTCCTGTTAGTGTGGAATCTGCATCAGAGGCAGCTGCATGTGTGAAGGTAATGATTGCTTCTCGCACACTCAGTGACTCTGCCCCTAGTAGCTCAACAATCGAGGCTCCATTGACTATAAATGTTCCAGTTTGCCATTCATCTGCAACACTTATTGAAAGTTCACAACCCTCTAATTTGATACAAGGGACAAACATTGTTTTTCCAGTCACTGTTCAGAGACAAACATTGCCAACACACCCTCTACCACCAGCAGATGGTATTGAATCTAAGGGATTAGTTGGTGGGAATTTGGCATCCAAAAGAAAACGGAAAACATGGTCAGAGGAAGAGGACATACAACTACGAGCTGCTGTTCAAAGATGGGGCGAAGGGAATTGGGCAACCATGGCAAAAGGAGACAACTTTCCTATTAAGAGAAGTCCTACACAGTTAGCACAGAGGTGGAGCATTTTACGAAAGAAAGATGGCACTGTCAATTCTGGAACCATATCAACCAGCTCACAATATACTACTGCTGAACAACTGGCAACCCGACACTCTTTATCATTAGCCCTTGATATGCCATTCAAAAAGTTAACTGCTCCTGGAGTGTCAGATCCTGGTAATTATGGAAAAGCAAACCCTGATTCAGGTAATAAAATGGAAGTGAGGATTGAGAAGGAAACCAATCTAATGGGTGGAACGATGGGGAGTAGAAAATGTTTCCGGTCCTAG 1011 0.4411 MSEKKTRVSFTEKDAVALMQRYDPTTVFILLQEVAHYAKPKIDWSELVKKSATGISNVREYQMLWRHLAYRHSLPENFEVGAEPLDDDSDLECELEALPPVSVESASEAAACVKVMIASRTLSDSAPSSSTIEAPLTINVPVCHSSATLIESSQPSNLIQGTNIVFPVTVQRQTLPTHPLPPADGIESKGLVGGNLASKRKRKTWSEEEDIQLRAAVQRWGEGNWATMAKGDNFPIKRSPTQLAQRWSILRKKDGTVNSGTISTSSQYTTAEQLATRHSLSLALDMPFKKLTAPGVSDPGNYGKANPDSGNKMEVRIEKETNLMGGTMGSRKCFRS 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02599 336 CDD SANT_TRF 203 252 - -
Vimu10g02599 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 197 255 IPR017930 -
Vimu10g02599 336 Gene3D - 195 256 - -
Vimu10g02599 336 Pfam Myb-like DNA-binding domain 202 247 IPR001005 -
Vimu10g02599 336 SUPERFAMILY Homeodomain-like 200 253 IPR009057 -
Vimu10g02599 336 ProSiteProfiles Myb-like domain profile. 197 251 IPR001005 -
Vimu10g02599 336 SMART sant 201 253 IPR001005 -
Vimu10g02599 336 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 2 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02599 Vimu-Chr10 37418147 37424952 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu10g02599 Myb_DNA-binding 9.1e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02599 - - gmx:100799956 484.182