Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02588 ATGTACGATCCCATGAACCAGATCGTCCCCGCCGAAGACAACGACGCCTCCGACCAACACATCCATTACAGCTCCCACACCATAGAAGACGTTGGCGCCGTCGTCGAACACGTTTCCACCGACTCCCTTTACGTTCCACCCCCTGAAATCTCTATCCACGATTCTAGCCAGCTCACACTCTCGTTTCGGGGCCAAGTCTATGTCTTCGATGCCGTCACTCCTGATAAGGCAGTCCAAGCAGTATTGTTGCTCTTGGGAGGAAGTGAACTAACTTCGGGCTCGCAATGTGCGGAGGAACTATCCCCTCAAAATCATGCGGGTGCAGCAGAATTTCCTACAAGATGCAGTCTACCACAGCGAGTAGCATCGTTGAATAGGTTCCGTCAGAAGAGGAAAGAGCGGTGCTTTGATAAGAAAGTTAGATATAGTGTACGTCAAGAAGTTGCACTCAGGATGCATCGTAACAAGGGTCAATTTACTTCATCTAAGAAACAAAATGGAGCTAATAGTTGGGGTTCAGACCAAGAGTCGGGACAAGAGGCTGTTCAATCTGAAACATCTTGTACACATTGTGGAACAAGTTCAAAATCCACTCCAATGATGCGAAGGGGTCCCTCTGGTCCAAGGTCACTTTGCAATGCTTGCGGGCTTTTTTGGGCAAACAGGCATTCTGATGCCTTAATTCTGCAGGGCACTTTGAGGGATCTTTCTAAGAGAAACCAAGAACTCTCTATTGTGCCACTTGAGCAGGTTGGTGTGGGTAATAATAATGACTTGGACTGTCTGAGCATTATCCCTGCACAACATGACAATCATGTTAATGATAACAAAGCTTTGGTATCTGATCGTTGA 852 0.4718 MYDPMNQIVPAEDNDASDQHIHYSSHTIEDVGAVVEHVSTDSLYVPPPEISIHDSSQLTLSFRGQVYVFDAVTPDKAVQAVLLLLGGSELTSGSQCAEELSPQNHAGAAEFPTRCSLPQRVASLNRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKKQNGANSWGSDQESGQEAVQSETSCTHCGTSSKSTPMMRRGPSGPRSLCNACGLFWANRHSDALILQGTLRDLSKRNQELSIVPLEQVGVGNNNDLDCLSIIPAQHDNHVNDNKALVSDR 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02588 283 ProSiteProfiles Tify domain profile. 51 86 IPR010399 -
Vimu10g02588 283 ProSitePatterns GATA-type zinc finger domain. 188 215 IPR000679 GO:0006355|GO:0043565
Vimu10g02588 283 PANTHER GATA TRANSCRIPTION FACTOR 28 17 250 IPR045280 GO:0006355
Vimu10g02588 283 ProSiteProfiles GATA-type zinc finger domain profile. 182 218 IPR000679 GO:0006355|GO:0043565
Vimu10g02588 283 MobiDBLite consensus disorder prediction 153 206 - -
Vimu10g02588 283 Pfam CCT motif 120 162 IPR010402 GO:0005515
Vimu10g02588 283 ProSiteProfiles CCT domain profile. 120 162 IPR010402 GO:0005515
Vimu10g02588 283 Pfam tify domain 55 86 IPR010399 -
Vimu10g02588 283 SMART GATA_3 182 243 IPR000679 GO:0006355|GO:0043565
Vimu10g02588 283 CDD ZnF_GATA 187 241 IPR000679 GO:0006355|GO:0043565
Vimu10g02588 283 Gene3D - 179 244 IPR013088 GO:0006355|GO:0008270
Vimu10g02588 283 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 182 223 - -
Vimu10g02588 283 MobiDBLite consensus disorder prediction 155 201 - -
Vimu10g02588 283 SMART tify_2 51 87 IPR010399 -
Vimu10g02588 283 Pfam GATA zinc finger 188 223 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02588 Vimu-Chr10 37252685 37257307 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02588 24 251 Tify Gene Family AT4G24470 59.740 2.07e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vimu10g02588 CCT 7.2e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02588 - - pvu:PHAVU_009G035400g 487.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01692 1 17320268 17321612 Vimu10g02588 10 37252685 37257307 PCT