Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02587 ATGGCGTCACTCAATCCGCAGCATCTGCAGTTCCAGGTCCCTGCGATACCCGTCCACGACGACGATGACACTGACGCCGCTGATGATGCTGCTATGGATGAGTTGGAGGATGCGCATGTTACTTCAGTGGACGTCGTTGCTAATGCTGCCAGTATGCCGTCCAGAACTAGCGAGCTCACTCTTTCTTTCGAGGGTGAGGTTTATGTCTTTCCCGCAGTCACTCCTCAGAAGGTTCAAGCCGTCTTGATGCTTCTGGGAGGACGTGATGTGCACGCAGGTGTGCCTGCTGTTGAACTACCATTTGATCAAAGTAACAGGGGTATGGGTGATACTCCGAAGCTTTCGAACCTTTCACGAAGAATAGCATCCTTGGTCAGATTCCGCGAGAAACGAAAGGAAAGATGTTTTGACAAGAAAATTAGGTATACTGTGAGAAAAGAGGTGGCACAGAGGATGCATAGGAAGAATGGGCAGTTTGCATCCTTGAAAGAAAGCCCAGGTTCATCTAACTGGGATTCTGCCCGGAGTTCTGCTCAAGATGGCACTTCTCATTCTGAATCCGTATGTCACCATTGTGGTGTCACTGAAAATAATACTCCTGCAATGCGTCGGGGGCCAGCTGGACCAAGGACTTTATGTAATGCATGCGGCCTTATGTGGGCAAACAAGGTTAAGTTTGGTTGTGATGAAATGCTTGGTGTGAACTTGAACATCTCGCCATTTCATTGTTCATGTTGTGGACTATGGTCCAATGGTATAAGAACTAGCCGGAGCTTTATGGGCACACTCAGAGATCTCAGCAAGGGAGGAAGAAATCTTTCTGTTGAGCAAAGTGATCTGGATATTCCTATTGATGTCAAGCCTACTTCTGTTATTGAAGGAGAATTGCCTGGCATCCATGATGAGCAAGGTAGTTCTGAAGATCCGTCCAAGTCCAACACAGGTGATGGCTCTAGTGGTCATGCAGTAAACCCTAGTGATGAGGAATTGCCTGAAACTGCAGACCACTTTACGAATGCTCCGCCATTAGGACTTGTTCATTCTTCAAGGAATGACACTGAACAGGAACCTCTGGTTGAACTTTCTAATCCTTCAGATACAGATATTGACATTCCAGGAAACTTTGATTAG 1131 0.4686 MASLNPQHLQFQVPAIPVHDDDDTDAADDAAMDELEDAHVTSVDVVANAASMPSRTSELTLSFEGEVYVFPAVTPQKVQAVLMLLGGRDVHAGVPAVELPFDQSNRGMGDTPKLSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESPGSSNWDSARSSAQDGTSHSESVCHHCGVTENNTPAMRRGPAGPRTLCNACGLMWANKVKFGCDEMLGVNLNISPFHCSCCGLWSNGIRTSRSFMGTLRDLSKGGRNLSVEQSDLDIPIDVKPTSVIEGELPGIHDEQGSSEDPSKSNTGDGSSGHAVNPSDEELPETADHFTNAPPLGLVHSSRNDTEQEPLVELSNPSDTDIDIPGNFD 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02587 376 Pfam tify domain 54 86 IPR010399 -
Vimu10g02587 376 MobiDBLite consensus disorder prediction 153 186 - -
Vimu10g02587 376 SMART tify_2 52 87 IPR010399 -
Vimu10g02587 376 MobiDBLite consensus disorder prediction 296 376 - -
Vimu10g02587 376 SMART GATA_3 183 241 IPR000679 GO:0006355|GO:0043565
Vimu10g02587 376 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 185 224 - -
Vimu10g02587 376 Gene3D - 182 226 IPR013088 GO:0006355|GO:0008270
Vimu10g02587 376 MobiDBLite consensus disorder prediction 344 362 - -
Vimu10g02587 376 ProSitePatterns GATA-type zinc finger domain. 189 216 IPR000679 GO:0006355|GO:0043565
Vimu10g02587 376 MobiDBLite consensus disorder prediction 161 186 - -
Vimu10g02587 376 Pfam CCT motif 120 161 IPR010402 GO:0005515
Vimu10g02587 376 Pfam GATA zinc finger 189 223 IPR000679 GO:0006355|GO:0043565
Vimu10g02587 376 CDD ZnF_GATA 188 223 IPR000679 GO:0006355|GO:0043565
Vimu10g02587 376 ProSiteProfiles Tify domain profile. 52 87 IPR010399 -
Vimu10g02587 376 PANTHER GATA TRANSCRIPTION FACTOR 28 22 369 IPR045280 GO:0006355
Vimu10g02587 376 ProSiteProfiles CCT domain profile. 120 162 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02587 Vimu-Chr10 37242200 37247205 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02587 5 226 Tify Gene Family AT1G51600 49.796 6.72e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vimu10g02587 CCT 1.5e-13 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02587 - - vun:114164157 585.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02587 10 37242200 37247205 Vimu10g02587 10 37242200 37247205 ECH