Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02579 GGTTTGCTTGTGGGATGGGGTTGTTGTGATCTTGAGATTTTTGAGAGTGGTGATAGTTTGTTAACGTTAACCGATGTAATGAGGAAGAAAAGGAAAGGAAGCGAGGCCGATGCGTCTGCTGATCTGCCTGTTATTTTGTCTCCAAATCTTGGCTCTGCTTCGTCGAATTTGAAGTCCCATTATTCGCTAGAGGATTGTTCTAGGCTGAAGAAGAGGTGTTGTAAGGAGGAGGATGCTGCCACTGAGCCAGCTGCTTCCTTTAAAAGGAGGCTTGCCGGCATTGCCACTGCCCCGCCTTGTGGGACGTCTTCGTTGATCACGCCGGGGCGAGGGCTTAAGAGGAAGATTGGATGCATCGATGTTGCTACCCAGATGGGCAGGAAGAAGAAGATTGAGGATGATTATGTGACTGGTGAGACGATTGGGCAAGGCAAGTTTGGGTCTGTTTGGCTGTGTCGATCCAGGGTTAGCGGAGCAGAATATGCATGTAAGACCTTGAGGAAGGGGGAGGAGACGGTTCACCGAGAGGTTGAGATAATGCAACACTTGTCCGGTCATTCTGGGGTTGTGACACTACAAGCAGTTTATGAGGAAGCTGATTGCTTTCATCTTGTAATGGAATTGTGCTCTGGGGGACGACTAATCGATCAGATGGTTAAGGATGGTCCTTATTCAGAACAGAGGGCTGCTAATGTACTCAAGGAAGTGATGTTAGTCATCAACTATTGTCATGACATGGGAGTTGTGCACCGGGATATCAAACCTGAGAATATTCTGCTCACAGCATCTGGGAAAATAAAGCTTGCAGATTTTGGTTTGGCCATGAGAATTTCCGAAGGTCAGAACTTGACTGGTTTGGCGGGAAGCCCTGCCTATGTTGCCCCAGAAGTATTGTTAGGCAGATACTCTGAGAAGGTGGATATATGGAGTGCTGGAGTGCTTCTGCATGCTCTGTTGGTTGGCAGTCTTCCATTTCAAGGAGATTCATTGGAAGCAGTTTTTGAGGCTATTAAGACCGTCAAATTAGATTTCCAAACTGGGATTTGGGAATCAATATCTAAACCTGCGCGAGATCTTATTGGGAGAATGCTGACAAGGGATATCTCAGCTAGGATATCAGCTGACGAAGTACTTAGACATCCATGGATATTGTTCTACACGGCACAGACACTGACGATGCTGCCCATCAAATCAAAATTGAAAAACCAAATTGGCGCAACAACTCAACAGTTTGTTGCTGTTCCTGAACCAGGATTAGGAGGAAATAGAATAGATAATTACTCACTTAGCGAGGGTTCATTCTCCGAAAGTTGCACTTCAGATGATCAGGATGAATCTGTGTTGATTGATGTGCTTGCCTCTGCAATTTCGCATGTGAGGATATCTGAACCGAAGAGGAGCAGGGTGTGTGGTCCCACAGGTCCGATAGTTCAACAAGGTTCATCTAACATGAAGCCTAACAACCTTTGTAAAGCATTTTAA 1482 0.4588 GLLVGWGCCDLEIFESGDSLLTLTDVMRKKRKGSEADASADLPVILSPNLGSASSNLKSHYSLEDCSRLKKRCCKEEDAATEPAASFKRRLAGIATAPPCGTSSLITPGRGLKRKIGCIDVATQMGRKKKIEDDYVTGETIGQGKFGSVWLCRSRVSGAEYACKTLRKGEETVHREVEIMQHLSGHSGVVTLQAVYEEADCFHLVMELCSGGRLIDQMVKDGPYSEQRAANVLKEVMLVINYCHDMGVVHRDIKPENILLTASGKIKLADFGLAMRISEGQNLTGLAGSPAYVAPEVLLGRYSEKVDIWSAGVLLHALLVGSLPFQGDSLEAVFEAIKTVKLDFQTGIWESISKPARDLIGRMLTRDISARISADEVLRHPWILFYTAQTLTMLPIKSKLKNQIGATTQQFVAVPEPGLGGNRIDNYSLSEGSFSESCTSDDQDESVLIDVLASAISHVRISEPKRSRVCGPTGPIVQQGSSNMKPNNLCKAF 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02579 493 Gene3D Transferase(Phosphotransferase) domain 1 126 415 - -
Vimu10g02579 493 ProSitePatterns Serine/Threonine protein kinases active-site signature. 248 260 IPR008271 GO:0004672|GO:0006468
Vimu10g02579 493 ProSiteProfiles Protein kinase domain profile. 135 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02579 493 Pfam Protein kinase domain 135 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02579 493 PANTHER SERINE/THREONINE-PROTEIN KINASE 122 403 - -
Vimu10g02579 493 ProSitePatterns Protein kinases ATP-binding region signature. 141 164 IPR017441 GO:0005524
Vimu10g02579 493 FunFam Serine/threonine-protein kinase PEPKR2 126 448 - -
Vimu10g02579 493 SUPERFAMILY Protein kinase-like (PK-like) 126 412 IPR011009 -
Vimu10g02579 493 CDD STKc_CAMK 134 382 - -
Vimu10g02579 493 SMART serkin_6 135 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02579 Vimu-Chr10 37156538 37158668 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02579 135 383 EF-hand Containing Proteins AT1G50700 45.174 1.96e-77 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vimu10g02579 Pkinase 1.9e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02579 - - gmx:100812729 870.537