Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02569 ATGATCACTCTGCCACTCACCACCTTCCACCATGACCTTTTTCTTTTTTACTGTTATTTTATTCTCCTCACGCACTTTCCGCCGCCGGCCGCCGCGCAGCTTCCCAACGACCTCACGCCACCGCCGCCGGACCGCTTATCCAAGCTCAAGTTCGATAAGTCCATGGCCATCGTTCTGGTGATCCTGGTGGCGGTGTTCTTCTTCCTCGGGTTCCTCTCCGTGTACACCCGCCAGTGCGCGGAGCGAAGGATGCGAGGGAGGTTCGACCTGTCCATCTCGATCACGCGTCGGCCACGTGGTCTTGACCGCGAAATCATCGAGACCTTCCCCACCTTCGTCTACTCCACCGTGAAGAGCCTCAAGATAGGACGCGCCACGCTAGAATGCGCCGTGTGCCTGAACGAGTTCGAGGAGGACGAAACGCTGCGTTTGATACCCAAGTGCAGCCACGTGTTCCACCCCGAGTGCATCGACGCGTGGCTCGCCAATCACTCCACTTGTCCCGTCTGTCGCGCCAACCTTGTCCCCAAACCCGACGACCCCTCCTTTGTTTCCATCCCAATCCCGGATCCGGTTCAACCCGTTTTAAACTCCCCGGTCCAACCCGAACCCACGGTTTCTCCCAAGCCCAATGATTTCATTAATCGCAACCGTTCACCGCGGTCAAGGTCAACGGGTTTCAGCATCGCCAGCTTGATTCCGCGATCTCACTCGACGGGTCACTCGCTGGTTCAACCGGGAGAGAATTGTGAGCGGTTCACTCTGCGTTTGCCCGAGGAAGTGCGGAACCAGCTGATGACTTCCACGACGCTGAGTCGCACCAAGAGTTGCGGCTTGAGCCTGGGACTCACGCGCGAGAACAGTGGGAGGAGGGGTTACAGGACCAGAAGCGTTGGTCACAGTCTTAGTCCTCACATGACAAGAGGCATGGGTGGCAGCAGCAGCAGCAGCCCTCACGTGCGGGGACACGACAGACGGTGGTTTTTTCAGAGCCCTCCGGCCAAGGACTCCGTTAAGGAAGATGTCGGCGAACGTTCTTCGGATCGTCTTTTCTCGGAGACCACGAAGGACAATAATTAA 1080 0.5759 MITLPLTTFHHDLFLFYCYFILLTHFPPPAAAQLPNDLTPPPPDRLSKLKFDKSMAIVLVILVAVFFFLGFLSVYTRQCAERRMRGRFDLSISITRRPRGLDREIIETFPTFVYSTVKSLKIGRATLECAVCLNEFEEDETLRLIPKCSHVFHPECIDAWLANHSTCPVCRANLVPKPDDPSFVSIPIPDPVQPVLNSPVQPEPTVSPKPNDFINRNRSPRSRSTGFSIASLIPRSHSTGHSLVQPGENCERFTLRLPEEVRNQLMTSTTLSRTKSCGLSLGLTRENSGRRGYRTRSVGHSLSPHMTRGMGGSSSSSPHVRGHDRRWFFQSPPAKDSVKEDVGERSSDRLFSETTKDNN 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02569 359 CDD RING-H2_EL5-like 128 171 - -
Vimu10g02569 359 SUPERFAMILY RING/U-box 123 179 - -
Vimu10g02569 359 SMART ring_2 129 170 IPR001841 -
Vimu10g02569 359 Pfam Ring finger domain 128 171 IPR001841 -
Vimu10g02569 359 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Vimu10g02569 359 MobiDBLite consensus disorder prediction 337 359 - -
Vimu10g02569 359 FunFam E3 ubiquitin-protein ligase ATL6 90 177 - -
Vimu10g02569 359 MobiDBLite consensus disorder prediction 196 225 - -
Vimu10g02569 359 MobiDBLite consensus disorder prediction 208 225 - -
Vimu10g02569 359 MobiDBLite consensus disorder prediction 281 359 - -
Vimu10g02569 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 176 IPR013083 -
Vimu10g02569 359 PANTHER RING FINGER DOMAIN-CONTAINING 41 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02569 Vimu-Chr10 37054990 37057176 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02569 50 292 Rapid Response to Elicitors AT3G05200 47.222 3.37e-68 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02569 K10664 - gmx:100805815 469.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02569 10 37054990 37057176 Vimu10g02569 10 37054990 37057176 ECH
Vimu1g01940 1 25372730 25374754 Vimu10g02569 10 37054990 37057176 PCT