Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02562 ATGAGTTCAACTCCCGGTATGAGAGTCAGCGAGGATTCTGGCCAAATAGAGAGGTCCCTTTGGGTTCTTGAACCTCCCAATCCACCACCTCTAAGGAACAAGCTATTCACTCCACTCAAGAAATCCATCTCCTCTTTCTCATCCAATAACAAGCCTTGCCATCGACGTCTTCTTTCATTCTTAGAGACTTTGTTTCCCATCCTTTGCTGGTTCAAAACTTACACAGCCTCAAAGTTTAAAAATGATTTGCTAGCCGGTTTAACTCTTGCTAGCCTCAGCATACCTCAGAGTATAGGATATGCTAATTTGGCGAAGCTTGATCCTCAGTATGGCTTGTGTAGTGTTGTTCCTCCTCTTATCTATGCTGTGATGGGGAGTTCAAGAGAAATAGCCATTGGACCTGTAGCTGTAGTATCATTGCTTCTATCCTCCCTAGTCCCCAAAGTGGTAGATCCTGGTGCTGATCCTGATGCCTACAGGAGTGTTGTCTTTACCGTGACCTTATTTGCTGGAATCTTTCAAGCTGCATTCGGTATTTTCAGGTTGGGGTTTCTTGTGGATTTTCTTTCCCATGCTGCACTTGTTGGATTCATGGCAGGCGCAGCCATCGTTATTGGTCTGCAGCAGCTGAAGGGGTTGCTGGGGATTACTCACTTTACCAACAAAACTGATGTAATATCCGTGTTGGAGTCTGTATACAAGTCACTCCGCCAACAGATAACATCAACAGAAAAATGGTACCCTCTGAATTTTGTCATCGGGTGTTCATTCCTGATATTCCTGTTAATAGCTCGATTTGTTGGCAGAAGAAACAAAAAACTTTTCTGGTTGCCAGCTATTGCTCCTCTTGTATCGGTTTTACTATCAACTTTAATTGTTTATTTGTCAAAAGCTGATCAGAATGGGGTTAATATAGTAAGGCATGTCAAAAGAGGGTTGAATCCAAGTTCAGTTCACAAGTTACAATTTCATGGTTCAAATGTTGGACAAACAGCTAAAATTGGATTGATTTCTGCCGTTATTGCTCTCACTGAAGCAATAGCAGTTGGTAGATCTTTTGCTTCCATTAAGGGATACCATCTTGATGGCAACAAAGAAATGCTGGCAATGGGATGCATGAACATTGCGGGATCTCTCTCTTCATGCTATGTGGCAACTGGTTCTTTCTCAAGGACAGCAGTAAATTTCAGTGCAGGATGTCAAACATCAGTATCAAATATTGTGATGGCTGTTACTGTGCTTCTGTGTCTTGAATTGTTTACAAGGCTTCTGTACTACACTCCCATGGCCATACTTGCATCTATCATCCTCTCTGCACTTCCTGGGTTAATTGACATAAATGAAGCTTGTTATATTTGGAAGGTTGACAAATTTGACTTTCTTGCTTGCATTGGTGCCTTCTTCGGAGTCTTGTTTGTATCAGTGGAAACTGGTCTTCTTGTTGCAGAATCACTTCCTAGAACACTTGTTAGTTATGGTCATTTCACTATTCATCCATTAAATCAAATTAAGGTCTCAATCTCCTTTGCAAAGATACTGATACAATCAATCAGACCAGGGATAGAAGTTTTAGGACGAGTTCCAAGAACAGAAGCTTTCTGTGATGTTAGTCAATATCCTATGGCCACAAGCACACCAGGCATTTTGTGGATCATGGAAGAAGAAAACGAACTTGCCAAGGGAAGGGTCCATGCAGTGATCTTAGACATGGGCAATCTCATGAATGTTGATACTTCTGGGATTCTAGTACTGGAGGAACTGCACAAGAGGTTGCTTTCGCGTGGCGTACAGTTGGCCATGGTGAACCCCAGGTGGCTAGTGATTTACAAGCTGAAAGTGGCAAACTTTGTGGATAAAATTGGAAAGAAATGGGTTTTTCTTACTGTTGCTGAAGCTGTAGATGCATGTCTATCTTCAAAATTCCCTGAACCATGA 1935 0.4196 MSSTPGMRVSEDSGQIERSLWVLEPPNPPPLRNKLFTPLKKSISSFSSNNKPCHRRLLSFLETLFPILCWFKTYTASKFKNDLLAGLTLASLSIPQSIGYANLAKLDPQYGLCSVVPPLIYAVMGSSREIAIGPVAVVSLLLSSLVPKVVDPGADPDAYRSVVFTVTLFAGIFQAAFGIFRLGFLVDFLSHAALVGFMAGAAIVIGLQQLKGLLGITHFTNKTDVISVLESVYKSLRQQITSTEKWYPLNFVIGCSFLIFLLIARFVGRRNKKLFWLPAIAPLVSVLLSTLIVYLSKADQNGVNIVRHVKRGLNPSSVHKLQFHGSNVGQTAKIGLISAVIALTEAIAVGRSFASIKGYHLDGNKEMLAMGCMNIAGSLSSCYVATGSFSRTAVNFSAGCQTSVSNIVMAVTVLLCLELFTRLLYYTPMAILASIILSALPGLIDINEACYIWKVDKFDFLACIGAFFGVLFVSVETGLLVAESLPRTLVSYGHFTIHPLNQIKVSISFAKILIQSIRPGIEVLGRVPRTEAFCDVSQYPMATSTPGILWIMEEENELAKGRVHAVILDMGNLMNVDTSGILVLEELHKRLLSRGVQLAMVNPRWLVIYKLKVANFVDKIGKKWVFLTVAEAVDACLSSKFPEP 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02562 644 Gene3D STAS domain 518 639 IPR036513 -
Vimu10g02562 644 Pfam Sulfate permease family 79 464 IPR011547 GO:0016020
Vimu10g02562 644 CDD STAS_SulP_like_sulfate_transporter 561 629 - -
Vimu10g02562 644 ProSiteProfiles STAS domain profile. 552 636 IPR002645 -
Vimu10g02562 644 NCBIfam sulfate permease 66 482 IPR001902 GO:0016020|GO:0055085
Vimu10g02562 644 SUPERFAMILY SpoIIaa-like 557 636 IPR036513 -
Vimu10g02562 644 PANTHER SULFATE TRANSPORTER 49 637 IPR001902 GO:0016020|GO:0055085
Vimu10g02562 644 Pfam STAS domain 556 632 IPR002645 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02562 Vimu-Chr10 36948598 36952482 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02562 3 640 Inorganic Solute Cotransporters AT5G10180 59.077 0.0 761
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02562 K17469 - gmx:100805269 1038.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02562 10 36948598 36952482 Vimu10g02562 10 36948598 36952482 ECH
Vimu1g01794 1 20236302 20240039 Vimu10g02562 10 36948598 36952482 PCT