Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02561 ATGACTTCAATGGGCCGTCCTTCTGATCAGAATCTTGAAACCAAAGAGATCGATCTGAGAAGTATGTCGTCTTCTTCACATGGTCAGGTACCACAAGTCTACAAAGTGGCAGTTCCTCCAAGACAGAACCTCTTCAAGGAATTCCAAGCCACCATAAAAGAAACATTCTTTGCTGATGATCCTCTAAGACCCTTCAAAGATCAATCTATATCAAGGAAGTTCATCCTCGGTATTGAGGCCATATTTCCAATACTTAAGTGGGGAAGAAGTTACAACCTTAAAAAATTTAGAGGGGATTTAATATCTGGTCTCACTATTGCGAGTCTTTGCATTCCTCAGGATATTGGATACGCCAAGCTTGCACATTTGTCTCCACAGTATGGACTGTATTCAAGTTTTGTTCCACCATTGATCTATGCTGTCATGGGTAGCTCTCGTGATATTGCTATAGGACCTGTAGCAGTGGTTTCTCTCTTGTTGGGGACCCTACTTAGTAATGAGTTTGATCCTATTACAAATGCGGAAGAATATCAGCGACTTGCTTTTACAGCCACTTTTTTTGCTGGGATTACTCAAGCAACGCTTGGTGTTCTTAGGTTAGGATTCTTGATCGACTTCCTTTCCCATGCTGCTATTGTCGGTTTTATGGGGGGTGCTGCTATCACAATTTCCCTTCAACAGCTCAAAGGTTTTCTTGGCATTAAAACTAAAATGTTCACAACGAAAACTGATATTGTCTCTGAGTTTGTAAATTGTTTTCTCATTCATTCATATTATGTGCGTCAGGGAAAGAAAAACAGGAGATTATTCTGGCTGCCAGCAATTGCTCCATTGATATCCGTTATTTTGTCCACTTTTTTTGTATTCATAACCCGTGCAGATAAGAAAGGAGTAGAAATTGTGAGAAAAATAGAAAAAGGAATCAATCCATCATCTGTTAAAGATCTTTATTTAACGGGAGAAAACCTTGGAAAAGGTTTTAAAGTTGGTATCGTGGCAGGCATGATAGCATTGACTGAAGCCTCGGCAATTGGAAGAACATTTGCATCTATGAAGGACTATCAACTGGATGGAAACAAAGAAATGGTTGCACTAGGAACAATGAATATTGTTGGTTCGATGACTTCCTGTTATGTGGCAACTGGTTCTTTCTCTCGGTCAGCAGTAAATTTCATGGCTGGCTGCCAAACTGCAGTCTCTAACATTGTGATGTCAGTAGTTGTGTTCTTAACCCTGGAATTCATCACTCCACTTTTTAAGTACACTCCAAATGCCATTCTTTCTGCCATCATCATTTCTGCTGTCGTCAACCTTATAGACTATGAGGCAGCAATTTTGATTTGGAAGATAGATAAATTTGACTTTGTCGCTTGCATGGGTGCATTCTTTGGCGTTGTTTTTGTCTCGGTTGAGATAGGACTTCTAATTGCTGTCTGTATATCCTTTGCAAAGATCCTACTACAAGTAACAAGACCCCGAACCGCAATTCTGGGGAAGATTCCTAGGACTAACGTCTATAGAAACATCCAACAATATCCAGAAGCTAGTAAGGTTCCAGGTGTACTGATTGTAAGAGTTGATTCTGCAGTATATTTTTCCAACTCCAATTATGTCAAAGAAAGGACATTAAGATGGCTGACGGATGAAGAAGATAAAGTGAAAGGAGACTACCCCACAAAAATCCAGTTTTTGATAGTTGAAATGTCACCCGTTACTGATATTGATACAAGTGGCATCCAAGCCTTCCAAGAGTTACATAGAAGTCTTGAAAAGAGAGGAGTTGAGCTTGTTCTGGCAAATCCTGGTCCAGTAGTGACAGAGAAGCTTTACGCATCCAATTTTGTAAACGCAATAGGAGAGGACAAGATCTTCCTCACCGTTGCAGAGGCTATTGCATATTGTTCTCCAAAGGTGGTTGAGGACCCTTGA 1929 0.4028 MTSMGRPSDQNLETKEIDLRSMSSSSHGQVPQVYKVAVPPRQNLFKEFQATIKETFFADDPLRPFKDQSISRKFILGIEAIFPILKWGRSYNLKKFRGDLISGLTIASLCIPQDIGYAKLAHLSPQYGLYSSFVPPLIYAVMGSSRDIAIGPVAVVSLLLGTLLSNEFDPITNAEEYQRLAFTATFFAGITQATLGVLRLGFLIDFLSHAAIVGFMGGAAITISLQQLKGFLGIKTKMFTTKTDIVSEFVNCFLIHSYYVRQGKKNRRLFWLPAIAPLISVILSTFFVFITRADKKGVEIVRKIEKGINPSSVKDLYLTGENLGKGFKVGIVAGMIALTEASAIGRTFASMKDYQLDGNKEMVALGTMNIVGSMTSCYVATGSFSRSAVNFMAGCQTAVSNIVMSVVVFLTLEFITPLFKYTPNAILSAIIISAVVNLIDYEAAILIWKIDKFDFVACMGAFFGVVFVSVEIGLLIAVCISFAKILLQVTRPRTAILGKIPRTNVYRNIQQYPEASKVPGVLIVRVDSAVYFSNSNYVKERTLRWLTDEEDKVKGDYPTKIQFLIVEMSPVTDIDTSGIQAFQELHRSLEKRGVELVLANPGPVVTEKLYASNFVNAIGEDKIFLTVAEAIAYCSPKVVEDP 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02561 642 Pfam STAS domain 512 630 IPR002645 -
Vimu10g02561 642 FunFam Sulfate transporter 31 491 637 - -
Vimu10g02561 642 SUPERFAMILY SpoIIaa-like 513 635 IPR036513 -
Vimu10g02561 642 Pfam Sulfate permease family 96 459 IPR011547 GO:0016020
Vimu10g02561 642 ProSiteProfiles STAS domain profile. 511 634 IPR002645 -
Vimu10g02561 642 ProSitePatterns SLC26A transporters signature. 125 146 IPR018045 GO:0008271|GO:0008272
Vimu10g02561 642 CDD STAS_SulP_like_sulfate_transporter 512 627 - -
Vimu10g02561 642 Gene3D STAS domain 491 638 IPR036513 -
Vimu10g02561 642 PANTHER SULFATE TRANSPORTER 42 634 IPR001902 GO:0016020|GO:0055085
Vimu10g02561 642 NCBIfam sulfate permease 83 630 IPR001902 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02561 Vimu-Chr10 36911359 36915257 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02561 1 641 Inorganic Solute Cotransporters AT1G22150 68.731 0.0 894
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02561 K17470 - gmx:100804208 1091.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02561 10 36911359 36915257 Vimu10g02561 10 36911359 36915257 ECH
Vimu1g01797 1 20328292 20334053 Vimu10g02561 10 36911359 36915257 PCT