Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02541 ATGGCAGCTATGATGGGTTTTTACAGCAGCACAGAGTTTCAACTTCCCTCAGATCCGTTCAGGGGTGAACTAATGGAAGTTCTTGAACCTTTTATGAAAAGTCCTTCCTCAACCCCTTCCTTTTCTTCTTCACCTTCAAACTCCTCTTTTCCTTCTACTTCTTACTCTCCTTCTCCCATCTACTTCCCCTCCTCACCCTCCTTCCCTGTTATCTACTCAAACAACTGCTCCGCATCGATGACCCATGCATTTGCCGACGGGTTATCCCTATCCAACACCCAAAACATCATAGGCTTCGCGCAAGGTCAACCAACGTCTCTTCTCGGCCTCAACCACCTAACCCCCTCTCAGATCTCTCAGATCCAGGCTCAAATCCAGACCCAGACCCAGCACCAGCAGAATCCCAACACCCTCAACTTCCTTGGGACCAAGCCCATCCCCATGAAGCACGTGGGCATGCCTCTGAAGCCCACCAAGCTTTATCGAGGGGTGCGGCAGAGGCACTGGGGGAAGTGGGTGGCTGAGATCAGACTCCCCAAGAATCGGACCAGGCTCTGGCTGGGAACATTCGACACCGCCGAGGAAGCCGCTCTGGCGTACGACAAGGCCGCGTACAAACTCCGAGGTGACTTCGCCAGGCTTAACTTCCCAAACCTCCGTCACCAGGGTTCCTCGGTGGGCGGAGGCTTCGGGGAGTACAAGCCGCTCCATTCCTCTGTTGACGCGAAGCTTCAGGCCATATGCGAAGGCCTGGCTGAGATGCAGAAACAGGGGAAGACCGAAAAGCCTCAGGGTTCGTCGAAGAGGTCACGGTCCAAAGTGGCTCCTCCGCCAGAGAAGGCTGATTCTGACAAGGGTTCGGACGACAAGACCAGCAACAAGTGTTGCAAGGTGGAAGCTTCCTCGTCTCCTGTTACGACGGAGAGCGAGGGTTCTGAAGGTTCTTCGCCTCTCTCGGATCTTACGTTTGCCGACGTGAGCGAGGCTCAGTGGGAAGGTGATTCGGATAATTTTAATCTCCTTAAGTACCCCTCTTATGAGATCGACTGGGATTCTCTGTGA 1062 0.5395 MAAMMGFYSSTEFQLPSDPFRGELMEVLEPFMKSPSSTPSFSSSPSNSSFPSTSYSPSPIYFPSSPSFPVIYSNNCSASMTHAFADGLSLSNTQNIIGFAQGQPTSLLGLNHLTPSQISQIQAQIQTQTQHQQNPNTLNFLGTKPIPMKHVGMPLKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSSVGGGFGEYKPLHSSVDAKLQAICEGLAEMQKQGKTEKPQGSSKRSRSKVAPPPEKADSDKGSDDKTSNKCCKVEASSSPVTTESEGSEGSSPLSDLTFADVSEAQWEGDSDNFNLLKYPSYEIDWDSL 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02541 353 Gene3D AP2/ERF domain 160 218 IPR036955 GO:0003700|GO:0006355
Vimu10g02541 353 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 8 353 - -
Vimu10g02541 353 SMART rav1_2 160 223 IPR001471 GO:0003700|GO:0006355
Vimu10g02541 353 MobiDBLite consensus disorder prediction 255 321 - -
Vimu10g02541 353 FunFam Ethylene-responsive transcription factor 2 159 218 - -
Vimu10g02541 353 MobiDBLite consensus disorder prediction 296 321 - -
Vimu10g02541 353 CDD AP2 159 219 IPR001471 GO:0003700|GO:0006355
Vimu10g02541 353 SUPERFAMILY DNA-binding domain 160 218 IPR016177 GO:0003677
Vimu10g02541 353 PRINTS Ethylene responsive element binding protein signature 161 172 IPR001471 GO:0003700|GO:0006355
Vimu10g02541 353 PRINTS Ethylene responsive element binding protein signature 183 199 IPR001471 GO:0003700|GO:0006355
Vimu10g02541 353 MobiDBLite consensus disorder prediction 262 295 - -
Vimu10g02541 353 Pfam AP2 domain 161 209 IPR001471 GO:0003700|GO:0006355
Vimu10g02541 353 ProSiteProfiles AP2/ERF domain profile. 160 217 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02541 Vimu-Chr10 36695826 36696887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02541 1 353 AP2-EREBP Transcription Factor Family AT1G78080 53.226 6.34e-99 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu10g02541 AP2 8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02541 K09286 - gmx:100800478 431.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02541 10 36695826 36696887 Vimu10g02541 10 36695826 36696887 ECH
Vimu1g01823 1 21631381 21634850 Vimu10g02541 10 36695826 36696887 PCT