Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02539 ATGGCTGTGCTTAGCGGGTTTTGGAGCCTGCCCCATAAGAATCTTGTGAAAAGGTTGGAAGGAGCTAAAGTTGGTGCTTGGGTTGATTCAATGAGAGCCTCTTCCCCAACTCGTGCCAAATCAGAAAGCCAAGAAAAAAGATATTGGATCCTTTATCACCCTTCAGCTCTGAATACCTTCGAGCAAATAACATATAATTCCAAAGGCAAAGAGGTTGTAGTTTTTCTTGACTACGATGGAACACTCTCCCCTATCGTTACGGATCCGGACAAAGCCTTCATGAGTCGAAAGGTTTTTCTTTTGTTCCCTCTTGTCTCATTCATTCTGGTGTGGGTGACTGATTTGCGTCTTTGTTTTTTGATATTAGATGAGAGCGACGCTGAAGGGAATCGCAAGACATTTTCCCACAGCAATCGTGACCGGGAGGTCTACAACTTTGTGAAACTGGCAGAACTTTACTATGCCGGGAGCCATGGCATGGACATCAAGGGGCCAACAAAAAGCCGAAGTCCAAAGCAAGGTAATAATAAAGCAGTACTGTTCCAACCCGCTAGTCAATTCCTGCCCATGATCGATGAGGTGTACAAGGTGTTGTTAGAGAAAACAAAGTCTGTCCCAGGGGCTAAGGTCGAGAACAACAAGTTTTGCTTGTCCGTTCACTTTCGTTGTGTTGACGAAAAGAGCTGGGCATCCCTAGCGGAGAAAGTTAGATTGGTGCTCACTGAGTACCCACAACTTAAGCTGACCCAAGGCAGAAAAGTGCTAGAGATTCGTCCAACCATCAAATGGGACAAGGGAAAGGCTCTTGAATTTTTGTTAGAATCATTAGGATACGAGAATTCGAGTGATGTATTTCCAATCTATATTGGTGATGATCGAACAGATGAGGATGCTTTTAAGGTTTTACGCAGTAGGGGTCAAGGAATTGGGATACTTGTTTCAAGAGTTGCAAAAGAAACAGATGCTTCCTACACCTTGCAAGATCCATCAGAGGCAAGTCCTATATAA 1008 0.4405 MAVLSGFWSLPHKNLVKRLEGAKVGAWVDSMRASSPTRAKSESQEKRYWILYHPSALNTFEQITYNSKGKEVVVFLDYDGTLSPIVTDPDKAFMSRKVFLLFPLVSFILVWVTDLRLCFLILDESDAEGNRKTFSHSNRDREVYNFVKLAELYYAGSHGMDIKGPTKSRSPKQGNNKAVLFQPASQFLPMIDEVYKVLLEKTKSVPGAKVENNKFCLSVHFRCVDEKSWASLAEKVRLVLTEYPQLKLTQGRKVLEIRPTIKWDKGKALEFLLESLGYENSSDVFPIYIGDDRTDEDAFKVLRSRGQGIGILVSRVAKETDASYTLQDPSEASPI 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02539 335 NCBIfam trehalose-phosphatase 141 331 IPR003337 GO:0003824|GO:0005992
Vimu10g02539 335 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 19 332 IPR044651 GO:0004805|GO:0005992
Vimu10g02539 335 SUPERFAMILY HAD-like 73 331 IPR036412 -
Vimu10g02539 335 Gene3D - 72 186 IPR023214 -
Vimu10g02539 335 Gene3D - 200 334 IPR023214 -
Vimu10g02539 335 Pfam Trehalose-phosphatase 139 330 IPR003337 GO:0003824|GO:0005992
Vimu10g02539 335 FunFam Trehalose 6-phosphate phosphatase 190 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02539 Vimu-Chr10 36660176 36661934 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02539 10 332 Trehalose Biosynthesis Gene Families AT1G70290 23.768 1.88e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02539 K01087 - gmx:100788641 514.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02539 10 36660176 36661934 Vimu10g02539 10 36660176 36661934 ECH
Vimu1g01827 1 21782590 21784600 Vimu10g02539 10 36660176 36661934 PCT