Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02517 TTGATAAATCTAAGTATAGCACAGAATATGGGAAGATCTCCATGCTGCGACGAGAATGGCCTTAAGAAAGGTCCCTGGACTCCCGAAGAAGATCAAAAGCTGGTTCAGCACATTGAGAAACATGGCCATGGAAGCTGGAGAGCCCTCCCTAAGCTAGCCGGTCTGAACAGATGTGGAAAAAGTTGTAGGCTAAGGTGGACTAACTATTTAAGACCTGATATCAAGAGGGGAAAGTTTTCTCAAGAAGAGGAGCAAACAATTCTGCATCTCCATTCTATCCTTGGAAACAAATGGTCAGCAATTGCGACCCACCTTCCTGGCAGGACGGATAATGAGATAAAAAATTTCTGGAATACTCATTTAAAGAAAAAGTTGATTCAGATGGGTTTTGATCCAATGACTCACCAACCCAGAACTGACCTTGTTTCCAGCTTGCCCTATCTGCTAGCTTTGGCCAACATGACAGACCTTATGGATCATCAGTCCTTGGATGAACATGCTATGATGTTGCAAGCAGAGGCAGTCCAGCTGGCAAAGCTTCAATACCTTCATTATCTAATCCAATCCTCAAACTCCTTAAGCTCCAACCACTATGATCAAAATGCCACCACAAACAACATTGAACCTTTCACTTTGTTAAACTCAATCTCCAATGTGAAAGAGAATTCAGTCATGCTGCTACCAGATGCTCCTGCCTCATTTTCACATGGCATTGCTAGTTCTCAACCACTCCACCACCCAAACGTGCTACCTCACCTTATAGACCCACAAGTCTCTTTCAGTTCTCAATCATGTTTGAATAGTGAGATGGGTCAAGGTACTAACTTTGCAATGCTAAGTCAAGGGGATCACACGCTCGATCATGACTCTTCCTGGACTATTCCATCTATTCCTCCGAATGCAATAGCTACATCAGCTAACAATCCAGGAGATGCTAGCAGCAGCACTTCTAGCTATGGAGGAGGACCCCAATCTTATTGGCCTGAACTATTTTTCGAGGACCCCATCATGCATCAGCTATCTTAG 1026 0.4386 MINLSIAQNMGRSPCCDENGLKKGPWTPEEDQKLVQHIEKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHQPRTDLVSSLPYLLALANMTDLMDHQSLDEHAMMLQAEAVQLAKLQYLHYLIQSSNSLSSNHYDQNATTNNIEPFTLLNSISNVKENSVMLLPDAPASFSHGIASSQPLHHPNVLPHLIDPQVSFSSQSCLNSEMGQGTNFAMLSQGDHTLDHDSSWTIPSIPPNAIATSANNPGDASSSTSSYGGGPQSYWPELFFEDPIMHQLS 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02517 341 FunFam MYB-related transcription factor 22 75 - -
Vimu10g02517 341 SUPERFAMILY Homeodomain-like 20 117 IPR009057 -
Vimu10g02517 341 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 10 255 - -
Vimu10g02517 341 SMART sant 22 72 IPR001005 -
Vimu10g02517 341 SMART sant 75 123 IPR001005 -
Vimu10g02517 341 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Vimu10g02517 341 MobiDBLite consensus disorder prediction 291 321 - -
Vimu10g02517 341 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Vimu10g02517 341 Pfam Myb-like DNA-binding domain 76 121 IPR001005 -
Vimu10g02517 341 Gene3D - 78 125 - -
Vimu10g02517 341 FunFam Transcription factor MYB39 78 139 - -
Vimu10g02517 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 70 IPR017930 -
Vimu10g02517 341 ProSiteProfiles Myb-like domain profile. 18 70 IPR001005 -
Vimu10g02517 341 CDD SANT 78 121 IPR001005 -
Vimu10g02517 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 125 IPR017930 -
Vimu10g02517 341 CDD SANT 25 70 IPR001005 -
Vimu10g02517 341 Gene3D - 22 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02517 Vimu-Chr10 36406027 36407311 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02517 10 341 MYB Transcription Factor Family AT1G34670 55.135 4.03e-119 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu10g02517 Myb_DNA-binding 6.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02517 K09422 - gmx:100811162 604.364