Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02504 ATGAGTGAGACAGCCAGTCTTCATGCACAGACAAGGACACCCATTTCTTCTCTTGAAGCCATGGCTCATCACCACCCTCATTATCGGTCACCCTTCGGAGACACTACCTTCACCAAACTCTTCGTCGGAGGACTAGCCTGGGAGACTCCCACCGAAGAAATGCGCAAATATTTCCAGCAGTTCGGTGACATTCTTGAAGCTGTCATAATCACTGACAAGAACACCGGAAAATCCAAAGGCTACGGTTTCGTAACATTCTGCGACCAAGAATCAGCAAGAAGAGCATGTGCTGATCCAAATCCAATAATAGATGGCAGAAGAGCAAATTGTAATATTGCTTCTCTGGGAAGGACTCGACCTTCACCACCTCGAGGGAGGAATATAGTTCAAGGTGGAGGAGGAACAACAGTACAGAGTGTTCCGGGAGCGGGAGCGCCGCCGTCGCTGCCGCCAGCACCTGCTGTTCTGTATCCGCCATATGGCTACGCAGCCTACACTCCTGATTATGGATACCACCACCAAGCCACATTGTACAACCCACAGATTCAGCAACCACAATACTATCAACAAGTATACGGAGCATCATCTTCCACCATGAGCACCCCGTATTACTATGGTTACTCTGTGCAAGCACCAAGAAACACATTTTCCTCACCCCAGGCAAATCGCCTATCACCTGGACCATCTTATCTGTACTATCCTACACCCGTGGAAGTCTCATTCTCTGCATATCGCCCACTCCAATCACCAGTGACCCAAAACTTTCCTTCTCCAACTGATTCACAGAGTCAGCAGCGTATCTCCTCTGAAACAGCAGCCACTTCAGAAAGTTCAAATACCCAAGGGAAGAACTAA 855 0.4865 MSETASLHAQTRTPISSLEAMAHHHPHYRSPFGDTTFTKLFVGGLAWETPTEEMRKYFQQFGDILEAVIITDKNTGKSKGYGFVTFCDQESARRACADPNPIIDGRRANCNIASLGRTRPSPPRGRNIVQGGGGTTVQSVPGAGAPPSLPPAPAVLYPPYGYAAYTPDYGYHHQATLYNPQIQQPQYYQQVYGASSSTMSTPYYYGYSVQAPRNTFSSPQANRLSPGPSYLYYPTPVEVSFSAYRPLQSPVTQNFPSPTDSQSQQRISSETAATSESSNTQGKN 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02504 284 PANTHER BOULE-RELATED 16 265 - -
Vimu10g02504 284 MobiDBLite consensus disorder prediction 248 284 - -
Vimu10g02504 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 97 IPR000504 GO:0003723
Vimu10g02504 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 115 IPR000504 GO:0003723
Vimu10g02504 284 SUPERFAMILY RNA-binding domain, RBD 21 133 IPR035979 GO:0003676
Vimu10g02504 284 SMART rrm1_1 39 111 IPR000504 GO:0003723
Vimu10g02504 284 Coils Coil 284 284 - -
Vimu10g02504 284 CDD RRM_RBM24_RBM38_like 38 113 - -
Vimu10g02504 284 FunFam RNA-binding protein 24-B isoform X1 25 134 - -
Vimu10g02504 284 Gene3D - 5 134 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02504 Vimu-Chr10 36249354 36253271 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02504 34 114 C2H2 Transcription Factor Family AT2G19380 38.272 5.81e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02504 K25006 - gmx:100811977 466.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02504 10 36249354 36253271 Vimu10g02504 10 36249354 36253271 ECH
Vimu1g01863 1 23041906 23046350 Vimu10g02504 10 36249354 36253271 PCT