Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02498 ATGGAGTCTCGGAGAGATCGCAGGACAGAAGCTCTTGGAGACCTTCGAGTCCTTCCCGATGAAATCCTCTGCGCGATTTTGGAACGTTTCACTCCGAGAGATGTTGCTCGGGTGGCTTGTGTTAGCAGTGTGATGTACACACTATGCAACGAAGAACCGCTGTGGATGAGTCTATGCCTAAAAGAAGCGACTGGTTTGCTGCAATACAAAGGCTCTTGGAAGAAAACTGTTCTGCATAATTTGAATCTGCCCGACAAATACAAAGAATACCATAGAGGACCTTTATATTTTGATGGTGAGAGTTCCAACAACACTACCAGTCCTTTATGCTTCAACTCTTTATTTTTGTACAGGAGATTATACCGCTGTCATACCACATTGGGTGCATTTCATGCGGATACTGGAAATGTGGAAAGAATAAAAGACATCTCATTGAAGGACTTCTATAATGAGTATGATGCAAAGAAACCGGTTATGCTCAGTGGATTGGCTGATACATGGCCCGCCAGGCATAAATGGACAACTGATCAGCTGTTGCTAAACTACGGAGATGTAGCATTTAAAATTTCTCAACGGGGAGCCCGGAAGATCTCCATGAAGTTCAAGGATTATGTCTCGTACATAAAAGTTCAGCATGATGAAGATCCCTTGTATATTTTTGATGAAAAGTTTGGTGAAGCTGCGCCTAGCTTATTGAAGGATTATTGTGTGCCTCATCTGTTTGAAGAAGACTTCTTTGATATCTTAGACACAGATAAAAGACCATCCTATAAGTGGCTCATAATTGGACCAGAGAGATCCGGTGCCTCTTGGCATGTTGATCCAGCTCTTACCAGTGCATGGAATACTCTTCTTTGTGGGCGTAAAAGGTGGGCATTATATCCGCCTGGAAAAGTGCCTTTGGGCGTGACTGTTCATGTTAATGAAGAAGATGGTGATGTCAATGTTGAGACTCCATCATCACTGCAGTGGTGGCTAGACTTTTATCCTCTTCTTGCTGACGAAGACAAGCCAATTGAGTGTACACAGCTACCTGGAGAAACAATTTATGTTCCAAGTGGATGGTGGCACTGTGTGCTAAATTTGGAAACAACTATTGCTGTCACGCAGAATTTTGTGAATTCCAACAATTTCGAATTTGTATGTTTGGATATGGCACCTGGTTATCATCATAAAGGAGTTTGCCGTGTTGGGTTACTTGCTCTTGATGAAGATGGTTATGAAAATGTCAGACAGAACATACCATGTAATGAAAATAACTCGAGTTACAATGATTTGTCAAGGAAAGAGAAAAGAGCCAAAACTCAGAAAGATGCTGATGGTATATATAATAAAAGAGCCATAAATGGTGTATCTAGAAGCTACAATTTATGGAAAGATGGATTTTCCTATGATATAAACTTCTTATCCATGTTTTTGGATAAAGACAGAGACCACTACAGTTCCTTGTGGAGCTCAGGGAACAGCATTGGTCAGCGAGAACTAAGAGAATGGCTATCCAAGCTCTGGATTCAAAAACCAAAATTAAGAGAGCTATTATGGAAGGGAGCATGTATTGCACTAAATGCCAACAAGTGGTTAGAATGCCTATCAAAAATTTGTGCCTTCCATAATTTGCCCCCTCCCACTGACGATGAAAGGCTTCCAGTTGGTACGGGTAGCAATCCTGTTTATTTAGTGGGAAACACTGTTGTTAAGATTTTTGTTGAAGGAGGACTGGAAGCTTCACTTTATGGTTTAGGCACAGAGCTAGAGTTTCAGAGTAGGTTGCATGAAGCCAACTCCCCGCTTAGTAAACATATACCTTATGTTTTGGCCAGCGGAATTATTTATCTTGAAAATGGATCTTGTACCAATTTAAGTTGGGATGGAAAAGGTGTACCTGATATCATTGTGAAAAACAATATCACCAGTAGGAAATGCAGTGTTGATGATTTCTCATTTGGGGTGTGGGGCAGGAAACAGTTAGAGTATAGGAATGCTGGGATGCCTCTGAATGAATCAGGTAGCTTAGCTGGTAACTCAAACATATGGCCATATGTGATAACAAAACGATGTGCAGGGAATATGTTTGCAGAATTAAGAGATAAACTGACATGGGAAGATACAACAAACTTGGCCTCATTCTTGGGGGAGCAACTGCATTATCTTCATCTTTTGTCATATCCGCCTCCAAATATCTTATATTTCTCTGATATTGATCATGAATTAAGCTTGGTTGAGGCTAATGGTTATATTGCAACTGTTAACAGTAAATCAAATGTTACAGCAGAATGGTGGCTCTTCACCAAAACCTTAGCAAAGATGAGAAAAGATGTGTCAAGCCGTTTGACCAAGTGGGGTGATCCAATTCCTAGCAAACTCATTGAGAAGATTGATGAATATATTCCACCTGATTTTGCTGAGAAGTTTGGAAACTATGCTTGTAAACCTTGCTCCTGGATACACACGGACATTATGGATGATAACATTTACATGAAACCATCATTGGTTTGCTCTACCCCTGCTGGAAATAATGAAGGTAGCACCATGCTGGACAATGGTTTGTTGAGTAATCATGAAGTAAAATCATGGTGTCCTAGTCACATTCTTGACTTTAGTGATCTTTCAATAGGTGATCCTCTTGTTGACTTGATACCAATTTATTTAGATGTGTTTAGAGGTGATTCACGTCTCCTTAAGCAGTTTTTAGAAAGTTACAAACTTCCTTTTGTTCGTGAGGTATCAAGGTGGGAGTCAACAGAGGGTGATCAAAAGTTTGGCCGACTTTCATATCTTGCCATGTGTTATTGTATCTTGCATGATGACAATGTATTGGGAGCTCTTTTTAGCATATGGGAAGAACTGAGGTCAGCACAGTCATGGGAAGAAGTTGAGCTGGCAGTGTGGGGGGAACTGAACAATTACAAAGGCTTTCCGTGA 2922 0.4062 MESRRDRRTEALGDLRVLPDEILCAILERFTPRDVARVACVSSVMYTLCNEEPLWMSLCLKEATGLLQYKGSWKKTVLHNLNLPDKYKEYHRGPLYFDGESSNNTTSPLCFNSLFLYRRLYRCHTTLGAFHADTGNVERIKDISLKDFYNEYDAKKPVMLSGLADTWPARHKWTTDQLLLNYGDVAFKISQRGARKISMKFKDYVSYIKVQHDEDPLYIFDEKFGEAAPSLLKDYCVPHLFEEDFFDILDTDKRPSYKWLIIGPERSGASWHVDPALTSAWNTLLCGRKRWALYPPGKVPLGVTVHVNEEDGDVNVETPSSLQWWLDFYPLLADEDKPIECTQLPGETIYVPSGWWHCVLNLETTIAVTQNFVNSNNFEFVCLDMAPGYHHKGVCRVGLLALDEDGYENVRQNIPCNENNSSYNDLSRKEKRAKTQKDADGIYNKRAINGVSRSYNLWKDGFSYDINFLSMFLDKDRDHYSSLWSSGNSIGQRELREWLSKLWIQKPKLRELLWKGACIALNANKWLECLSKICAFHNLPPPTDDERLPVGTGSNPVYLVGNTVVKIFVEGGLEASLYGLGTELEFQSRLHEANSPLSKHIPYVLASGIIYLENGSCTNLSWDGKGVPDIIVKNNITSRKCSVDDFSFGVWGRKQLEYRNAGMPLNESGSLAGNSNIWPYVITKRCAGNMFAELRDKLTWEDTTNLASFLGEQLHYLHLLSYPPPNILYFSDIDHELSLVEANGYIATVNSKSNVTAEWWLFTKTLAKMRKDVSSRLTKWGDPIPSKLIEKIDEYIPPDFAEKFGNYACKPCSWIHTDIMDDNIYMKPSLVCSTPAGNNEGSTMLDNGLLSNHEVKSWCPSHILDFSDLSIGDPLVDLIPIYLDVFRGDSRLLKQFLESYKLPFVREVSRWESTEGDQKFGRLSYLAMCYCILHDDNVLGALFSIWEELRSAQSWEEVELAVWGELNNYKGFP 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02498 973 ProSiteProfiles F-box domain profile. 12 58 IPR001810 GO:0005515
Vimu10g02498 973 SUPERFAMILY F-box domain 7 74 IPR036047 GO:0005515
Vimu10g02498 973 ProSiteProfiles JmjC domain profile. 226 389 IPR003347 -
Vimu10g02498 973 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 12 596 - -
Vimu10g02498 973 Gene3D - 7 89 - -
Vimu10g02498 973 Pfam Cupin-like domain 154 376 IPR041667 -
Vimu10g02498 973 SUPERFAMILY Protein kinase-like (PK-like) 678 905 IPR011009 -
Vimu10g02498 973 SUPERFAMILY Clavaminate synthase-like 129 381 - -
Vimu10g02498 973 Pfam F-box-like 17 61 IPR001810 GO:0005515
Vimu10g02498 973 SMART cupin_9 221 384 IPR003347 -
Vimu10g02498 973 FunFam F-box protein At1g78280 117 374 - -
Vimu10g02498 973 Gene3D Cupin 122 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02498 Vimu-Chr10 36159953 36179907 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02498 4 969 Glycosyltransferase AT1G78280 60.000 0.0 1194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vimu10g02498 Cupin_8 3.6e-21 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02498 - - gmx:100792541 1764.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02498 10 36159953 36179907 Vimu10g02498 10 36159953 36179907 ECH