Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02484 ATGGCGCTTCTACGTGTTGCGTGCTTAACTTCTGCAAATCAGTTATCGGCTCAAACCTATTCCCATTCCATCGCTCTCTCTTCCCTTTCCCAATCCATCAACTTCCCCAAACGCTCTTCCTTCCACCTTCTTACCACAGCCAAACAAACCCCTAATTTCACTCTCACATGCGTTTCCACTTCCCAACAACAACCCCAGCCAGTTACCGAAGAAGAATTTTCTCGCACAAGGTTGCTCGCTCAGAACGTCCCATGGACAAGCACCCCAGAGGATATTCGTTCTTTGTTTGAAAAACATGGAAAAGTCCTCGAAGTCGAGCTTTCTATGTATAAGAAAAACAGAAACCGGGGTTTGGCCTTTGTCGAAATGGGCTCTCCAGAAGAGGCTCTTGAAGCTCTCAATAAACTCGAATCGTATGAGTTTGAGGGCCGTGTAATGAAAGTCAATTATGCTCGGCCGAAAAAGCAGAAAACCCCGCCTCCGGTGAAACCAAAACCTGGCGTCACGTTTAACTTGTTTGTTGGTAACTTGTCTTATGAAGCCAAGTCCAAGGATCTCAAGGAGTTTTTTGATTCCGGAACTGGTAAAGTTGCTAGAGCTGAGGTTGTATTTCTTGACAATCCTAGAAAGCCGTCAGGTTATGGATTTGTGTCATTCAAGTCCAAGAAAGAAGCTGAGGCTGCTCTTGCTGAGTTCCAAGGAAAGGTAACTCCGGGTTTCTTCTTTGTTTGGATTTGGATTATTGAGTATGGGGAATGTCATTCTCGCAAGGTGGATCGGGGTCGTCGATTTGTTCAGAAGCCAGGGGATGGGAATTCAAAGTCTGTTGTAGATGCTCCTTCTGAGTTGAGTGTGAATGGGGCAGAAGCTCAAGAGCCAGCAGAGGAGACTCCAAACTCTGAAGATACTCCTGAGTTGAGTGTGAATGGGGCAGAAGCTGACAAAGCTGATTGA 954 0.4612 MALLRVACLTSANQLSAQTYSHSIALSSLSQSINFPKRSSFHLLTTAKQTPNFTLTCVSTSQQQPQPVTEEEFSRTRLLAQNVPWTSTPEDIRSLFEKHGKVLEVELSMYKKNRNRGLAFVEMGSPEEALEALNKLESYEFEGRVMKVNYARPKKQKTPPPVKPKPGVTFNLFVGNLSYEAKSKDLKEFFDSGTGKVARAEVVFLDNPRKPSGYGFVSFKSKKEAEAALAEFQGKVTPGFFFVWIWIIEYGECHSRKVDRGRRFVQKPGDGNSKSVVDAPSELSVNGAEAQEPAEETPNSEDTPELSVNGAEADKAD 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02484 317 MobiDBLite consensus disorder prediction 264 317 - -
Vimu10g02484 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 147 IPR000504 GO:0003723
Vimu10g02484 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 172 239 IPR000504 GO:0003723
Vimu10g02484 317 CDD RRM_SF 82 149 - -
Vimu10g02484 317 Gene3D - 158 242 IPR012677 -
Vimu10g02484 317 SMART rrm1_1 77 149 IPR000504 GO:0003723
Vimu10g02484 317 SMART rrm1_1 171 243 IPR000504 GO:0003723
Vimu10g02484 317 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 76 153 IPR000504 GO:0003723
Vimu10g02484 317 PANTHER OS02G0815200 PROTEIN 26 235 - -
Vimu10g02484 317 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 170 235 IPR000504 GO:0003723
Vimu10g02484 317 SUPERFAMILY RNA-binding domain, RBD 76 246 IPR035979 GO:0003676
Vimu10g02484 317 CDD RRM_SF 172 236 - -
Vimu10g02484 317 Gene3D - 48 157 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02484 Vimu-Chr10 36018571 36020134 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02484 76 266 Eukaryotic Initiation Factors Gene Family AT3G16380 29.648 3.35e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02484 - - gmx:100790439 389.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02484 10 36018571 36020134 Vimu10g02484 10 36018571 36020134 ECH