Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02482 TACAGGGAGAGGCTTTGTGAGAAAAGCTCACAAATAATGGCGCTAGAGGCTGTGGTATTTCCGCAAGATCCGTTTCCATACGCTTGCAAGGATTATTTTTACTCCTTAGTAGGAGCAGCACCTGACTACGGTTTTCAAGCGGCGGAAGAAGAGAAACTCCTCCTAGGAATCATCAACAACAACATAGAAGACAACCAATACACAACCTGGGATTCTTCTTCTACCTCGGTCTTACAAAATGTGAAGGAACAATGGGATTCTCACTCCTCCCCTGAAGCCTGCACCGTTGATGAATCCATGATCCCACCTCTTTCTTCCTCGGCGGAAGCCACCGCCACCGCCACAACCACGACTCGGCGGAAACGACGCCGTACGAAGAGCGCGAAGAACAAAGAGGAAATCGAAAACCAGAGGATGACCCACATTGCAGTTGAACGGAACCGCAGAAAGCAGATGAACGAGTACTTAGCGGTACTCCGATCCTTGATGCCCTCCTCTTACGTTCAGAGAGGCGACCAAGCGTCTATCATCGGAGGGGCCATTAACTTCGTGAAGGAGTTGGAGCAGGTTTTGCAGTCAATGGAGGGTGAAAAGAGACGGAAGCAGGGTCAAGAAGAGAATGTTGGGTTGAATGGGTGGACGACACCCTTTGCCGAGTTCTTCACGTTTCCTCAGTACACGACACGTGGCACACAGAAGCAGGAAGAGAAACAGTGGGCCGTAGCAGACATTGAAGTCACCATGGTCGACAGTCATGCAAATCTGAAGATTCTGGCAAAGAAACAACCCTCCCATCTCATGAAGATCGTTCTCGGCCTTCAAACTCTCAGACTCACCATTCTCCACCTCAATGTTACCACTCTCCACCACATGGTCCTTTACTCCATCAGCGTTAAGGTAGAGGAGGGTTGCGAGCTGAACACGGTGGATGAAATTGCGGCGGCGGTGAATCAACTGTTAGGCACAATCCAAGAAGTTGCATTCAGCTGA 990 0.499 YRERLCEKSSQIMALEAVVFPQDPFPYACKDYFYSLVGAAPDYGFQAAEEEKLLLGIINNNIEDNQYTTWDSSSTSVLQNVKEQWDSHSSPEACTVDESMIPPLSSSAEATATATTTTRRKRRRTKSAKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYVQRGDQASIIGGAINFVKELEQVLQSMEGEKRRKQGQEENVGLNGWTTPFAEFFTFPQYTTRGTQKQEEKQWAVADIEVTMVDSHANLKILAKKQPSHLMKIVLGLQTLRLTILHLNVTTLHHMVLYSISVKVEEGCELNTVDEIAAAVNQLLGTIQEVAFS 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02482 329 SMART finulus 142 193 IPR011598 GO:0046983
Vimu10g02482 329 MobiDBLite consensus disorder prediction 104 133 - -
Vimu10g02482 329 PANTHER MAX DIMERIZATION, MAD 82 326 - -
Vimu10g02482 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 136 187 IPR011598 GO:0046983
Vimu10g02482 329 CDD bHLH_AtFAMA_like 139 202 - -
Vimu10g02482 329 Gene3D - 126 211 IPR036638 GO:0046983
Vimu10g02482 329 Pfam Helix-loop-helix DNA-binding domain 137 188 IPR011598 GO:0046983
Vimu10g02482 329 FunFam Basic helix-loop-helix transcription factor 127 202 - -
Vimu10g02482 329 Coils Coil 184 207 - -
Vimu10g02482 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 136 202 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02482 Vimu-Chr10 35969917 35971068 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02482 13 300 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 52.273 4.90e-81 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu10g02482 HLH 4.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02482 - - gmx:100789380 481.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02482 10 35969917 35971068 Vimu10g02482 10 35969917 35971068 ECH
Vimu1g01933 1 25106848 25108345 Vimu10g02482 10 35969917 35971068 PCT