Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02475 ATGATTATCAAGAGAAACTTGAAATCCCAAATGCCGAATCTGAAACGGGTCAAACTCAGTGACTCGGTGGGCGAGGACGACGATTGTTCCTACGCTCGAAAGAAGAGAAAGACCAACGGTTACTACCCTTTGAACCTTCTTGGCGACGTGATTCCGGTTAGTTTTCATGGACTGTTAGGCGCCAGCGTGTCGGATAAAGGGTTCTCTGCAACGTGGTGCACGCAGGTGTCGTGCAACGGAGTGGAATCGAACGCTAAACACAACGTCGTCGTTGAGGCGAAGAAGAAGAGCGAGGTTCAGCGGCCACCTCTGGTTAGGACTTCGAGGGGGCGAGTTCAAGTTCTGCCTTCGCGGTTCAACGACTCTGTTATTGATAATTGGAGGAAAGAGAGCAAGAGTAGTAGCGGCTTGCGTGATGGTGATTATGATGATGAGTTTGAATGCAAGAAGGAGAAGCTCAGCTTCAGGGCACCCAAGGTTTGCACTAATCAAAAGAAGGGAAAAAACGAGGAGAAAACAGGTACCAAGGCTCGTAAGTACTCGGCATTGTGCAAGAGTTATGAGAGGAGCAAGTGTTCCAGTTTGCCTGGTGGTGGGGCATTGGCCTTGAGGCATGGTGGGTTGGTGGTTGAAGAAGACGAGAAGGGAAGGTTTTTGGAGGTGGAAGGAGTTGGTTTGATGGGTTTGAAGGAGAATAGTGGGGAGAGGAGAAATGGGTTGTTTGGGCCAGAAGATTTTTATGCAGGTGACATAGTGTGGGCCAAAGCTGGGAGAAAGGAACCTTTTTGGCCTGCCATTGTTATTGATCCTATGACTCAGGCTCCTGAGTTGGTTCTCAGGTCTTGTATAGCTGATGCAGCTTGTGTCATGTTTCTTGGGTACGCGGGAAATGAGAATCAAAGGGACTATGCATGGGTGAAGCATGGGATGATTTTTCCATTTGTGGATTATGTGGACAGGCGTGATGTTTCTTGGTTTAGGTTTCAGGGGCAGTCTGAGTTGAGTTTCTATAATCCTTCTGACTTCCAAATGGCAATAGAGGAGGCATTTTTGGCGGAGAGGGGTTTCACAGAGAAGTTGATAGCAGATATAAATACAGCAGCTACTAGCAATGGTTATGATGATTCCATTCTGAAAGCCTTTCAGGAGGTCACTCGTTCAAACCATTATGCAGGATATCGTTTTCTGAACCAGGATGACACATTGACACTCATTATAGGATTCAGAGTACTTAGTTTTCCACTGGAAATTGGCTCTGGCACAGTTAGTTTTGTCTCATTTGCAGGCCCAAAACTGACTTGGCATGCTTTTTCTGATTTATTTGATAAGAAAGAGACGCGGCCCTGTGAAGCTTGTGGGTTGAACCTTCCTTACAAGATGTTAAAGAAGACAAGGGATTCAAGGTCCGGGGGCCAATTCCTATGCAGAACTTGTGCCAGGTTAACAAAATCAAAGCATTATTGTGGCATATGCAAGAAAGTTTGGAATCATTCAGATAGTGGAAGTTGGGTGCGCTGTGATGGATGCAAAGTGTGGGTGCATGCAGAATGTGACAAAATTTCTAGCAACCTTTTCAAGAATCTTGAAGGCACTGATTATTACTGCCCTACGTGCAAAGCCAAGTTTGATTTTGAGTTATCTGATTCAGAAAAACCACATGCAAAAGTCAAGTGGAACAAAAACAATGGGCAGCTAGTGCTTCCAAATAGGGTCACTGTTCTCTGCAATGGTGTGGAAGGTGTATATTTTCCAAGCCTTCATTCAGTTGTGTGCAAGTGTGGGTTTTGTGGGGCAGAAAAGCAAGCACTCAGTGAATGGGAACGACACACAGGTTCCAAATCAAGAAATTGGAGAACAAGCATTAGGGTGAAAGACTCCATGCTACCTTTGGAACAATGGATGCTGCAGTTGGCAGAATTTCATGCTATTGCTCAAGTTCCTGCCAAACCCAAGAAACCTTCTTTAAAAGAAAGAAAGCAGAAGCTGCTTACCTTCTTGCAAGAGAAGTATGAACCTGTTTATGCTAAGTGGACTACTGAACGCTGTGCTGTTTGTAGATGGGTTGAAGACTGGGACTATAACAAAATTATCATCTGCATCAGATGTCAAATAGCTGTTCATCAAGAATGCTATGGAGCAAGAAATGTTCGAGATTTTACTTCTTGGGTTTGTAAGGCTTGTGAAACGCCTCACATCAAGCGGGAGTGTTGTCTTTGTCCTGTAAAAGGTGGTGCTCTGAAGCCAACTGATGTTGACACGCTATGGGTACATGTAACTTGTGCTTGGTTTCGACCTGAAGTCTCTTTTGCTAGTGATGAGAAGATGGAGCCTGCTTTGGGTATTCTAAGTATTCCATCAAATTCTTTTGTGAAGGTGGGGTATCTGATACGAAAACTTTCCCCTGATAATGTTAGTCATCAGTTGAAATGGATTTATTCTTTGCATATCCCACAAAGTGAATTTCTTCTCACCACTTTGAAAACTGGAAGAATTTGTGTTATTTGCAAGCAAATTCATGGGTCGTGTACACAGTGTTGCAAGTGTTCGACTTATTTCCATGCCATGTGTGCATCGAGGGCCGGATATCGAATGGAGTTGCATTGTTTAGAGAAAAATGGCAGGCAGACAACAAAAATGGTCTCTTATTGTGCTTACCACAGGGCTCCCAATCCAGATACTGTTTTGATTATGCAAACCCCGCTTGGGGTGATTTCAACCAAAAGCCTTCTCCAAACTAAGAAAAAAACTGGTTCAAGGTTAATCTCGTCTAACAGAAGAAAGCAAGATGTCACCCCTATTGATAACACCGAGCATGAGCCATTTTCTGCTGCCAGGTGCCGTATCTTTCAAAGAACAAACCATACCAAAAAGAGAGCTGCGGATGAGGCTGTTTCTCATCAAGTGAGGGGTCACTATCACCATCCTTTAGATGCAATACAGAGTTTAAATGCACCCAGAGTGGTGCCTGAGCCCCAGGCATTTTCTTCATTCAGAGAACGCCTTTACTACTTGCAGAGAACTGAAAGTGAACGGGTTTGCTTTGGTAGATCGGGCATACATGGATGGGGCCTCTTTGCACGTAGAAATATTCAAGAAGGAGAAATGGTTCTTGAATATCGTGGCGAACAAGTGAGACGCAGCATTGCAGATTTAAGGGAGGCACGCTATAGATTAGAAGGCAAAGATTGTTATCTGTTTAAGATAAGTGAAGAAGTGGTAGTAGATGCCACTGACAAAGGGAATATAGCACGGCTGATTAATCATTCTTGTATGCCAAATTGCTATGCAAGAATCATGAGTGTCGGTGATGATGAGAGCCGGATTGTTCTCATTGCCAAGACTATAGTGTCTGCCGGCGATGAGTTAACGTATGACTACCTGTTTGATCCTGACGAGCCAGATGAATTCAAAGTCCCCTGCCTATGTAAAGCTCCAAACTGCCGGAAATTCATGAATTAG 3459 0.442 MIIKRNLKSQMPNLKRVKLSDSVGEDDDCSYARKKRKTNGYYPLNLLGDVIPVSFHGLLGASVSDKGFSATWCTQVSCNGVESNAKHNVVVEAKKKSEVQRPPLVRTSRGRVQVLPSRFNDSVIDNWRKESKSSSGLRDGDYDDEFECKKEKLSFRAPKVCTNQKKGKNEEKTGTKARKYSALCKSYERSKCSSLPGGGALALRHGGLVVEEDEKGRFLEVEGVGLMGLKENSGERRNGLFGPEDFYAGDIVWAKAGRKEPFWPAIVIDPMTQAPELVLRSCIADAACVMFLGYAGNENQRDYAWVKHGMIFPFVDYVDRRDVSWFRFQGQSELSFYNPSDFQMAIEEAFLAERGFTEKLIADINTAATSNGYDDSILKAFQEVTRSNHYAGYRFLNQDDTLTLIIGFRVLSFPLEIGSGTVSFVSFAGPKLTWHAFSDLFDKKETRPCEACGLNLPYKMLKKTRDSRSGGQFLCRTCARLTKSKHYCGICKKVWNHSDSGSWVRCDGCKVWVHAECDKISSNLFKNLEGTDYYCPTCKAKFDFELSDSEKPHAKVKWNKNNGQLVLPNRVTVLCNGVEGVYFPSLHSVVCKCGFCGAEKQALSEWERHTGSKSRNWRTSIRVKDSMLPLEQWMLQLAEFHAIAQVPAKPKKPSLKERKQKLLTFLQEKYEPVYAKWTTERCAVCRWVEDWDYNKIIICIRCQIAVHQECYGARNVRDFTSWVCKACETPHIKRECCLCPVKGGALKPTDVDTLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKVGYLIRKLSPDNVSHQLKWIYSLHIPQSEFLLTTLKTGRICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCLEKNGRQTTKMVSYCAYHRAPNPDTVLIMQTPLGVISTKSLLQTKKKTGSRLISSNRRKQDVTPIDNTEHEPFSAARCRIFQRTNHTKKRAADEAVSHQVRGHYHHPLDAIQSLNAPRVVPEPQAFSSFRERLYYLQRTESERVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADLREARYRLEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIVLIAKTIVSAGDELTYDYLFDPDEPDEFKVPCLCKAPNCRKFMN 1152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02475 1152 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1152 IPR025780 -
Vimu10g02475 1152 ProSitePatterns Zinc finger PHD-type signature. 682 727 IPR019786 -
Vimu10g02475 1152 SUPERFAMILY SET domain 1000 1152 IPR046341 -
Vimu10g02475 1152 Gene3D - 243 356 - -
Vimu10g02475 1152 Pfam PHD-finger 694 728 - -
Vimu10g02475 1152 ProSiteProfiles Post-SET domain profile. 1136 1152 IPR003616 -
Vimu10g02475 1152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 482 542 IPR013083 -
Vimu10g02475 1152 SUPERFAMILY FYVE/PHD zinc finger 680 744 IPR011011 -
Vimu10g02475 1152 Gene3D SET domain 908 1152 IPR046341 -
Vimu10g02475 1152 Pfam PHD-finger 487 540 IPR019787 -
Vimu10g02475 1152 CDD PHD_TCF19_like 488 538 - -
Vimu10g02475 1152 ProSiteProfiles PWWP domain profile. 248 317 IPR000313 -
Vimu10g02475 1152 SMART set_7 1010 1133 IPR001214 GO:0005515
Vimu10g02475 1152 Pfam PHD-zinc-finger like domain 828 886 - -
Vimu10g02475 1152 Pfam PHD-zinc-finger like domain 735 787 - -
Vimu10g02475 1152 Pfam PWWP domain 249 349 IPR000313 -
Vimu10g02475 1152 PANTHER PHD FINGER PROTEINS 65 559 - -
Vimu10g02475 1152 SUPERFAMILY FYVE/PHD zinc finger 486 542 IPR011011 -
Vimu10g02475 1152 MobiDBLite consensus disorder prediction 915 935 - -
Vimu10g02475 1152 SMART PostSET_3 1136 1152 IPR003616 -
Vimu10g02475 1152 SUPERFAMILY Tudor/PWWP/MBT 241 356 - -
Vimu10g02475 1152 FunFam Histone-lysine N-methyltransferase 669 730 - -
Vimu10g02475 1152 ProSiteProfiles Extended PHD (ePHD) domain profile. 733 887 IPR034732 -
Vimu10g02475 1152 CDD SET_SETD1-like 997 1148 - -
Vimu10g02475 1152 SMART PHD_3 681 728 IPR001965 -
Vimu10g02475 1152 SMART PHD_3 487 539 IPR001965 -
Vimu10g02475 1152 SMART PHD_3 831 887 IPR001965 -
Vimu10g02475 1152 FunFam Histone-lysine N-methyltransferase 985 1152 - -
Vimu10g02475 1152 CDD PWWP_AtATX3-like 247 358 - -
Vimu10g02475 1152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 673 731 IPR013083 -
Vimu10g02475 1152 Pfam SET domain 1021 1126 IPR001214 GO:0005515
Vimu10g02475 1152 ProSiteProfiles Zinc finger PHD-type profile. 485 541 IPR019787 -
Vimu10g02475 1152 MobiDBLite consensus disorder prediction 915 929 - -
Vimu10g02475 1152 CDD PHD_ATX3_4_5_like 681 727 IPR042011 -
Vimu10g02475 1152 ProSiteProfiles SET domain profile. 1010 1127 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02475 Vimu-Chr10 35830193 35840776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02475 682 776 C2H2 Transcription Factor Family AT3G14740 41.000 4.02e-15 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vimu10g02475 SET 5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02475 - - gmx:100811337 1954.1