Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02470 ATGTCGTCGACGGTGCTGGAAGTAACGCGGGCGGCACACGAGGAGGTTGAACGGTTGGAGCGGCTGATAGTGAAGGAGCTCCAGAATGAGCCCGGCACCAACAAGGAGCGTTTGTATCAGAGTCACCGTGTGCGAAACATGATCGATACCATTGCCTCCACCACTGAAAAGCTTGTGCGTTTTCATCTTATTAGGTTTTTCCTTCTTTTTCCATTCTCACATCGTTACCTAGCTTGCTTTTCTACGTTTCAGATTGGGATATATGAAGATAACGACAATGCGAGGAAGGACGAGATTGCTGCACTCGGAGGCCAAACCGCCTCTGGAATTAACGTTTTCAGTGCCTTTTATGATAGACTCAAGGAGATACGAGAGTATCATAGGAAGCACCCAGTTGCACGTGTTGTTGACGCCAATGATGATTATGAAACGGTTCTCAAAGAAGAACCTCAAATTGAGTTTAGTGGAGAGGAAGCTCTTGGTCGATACTTAGATTTGCATGAATTATATTATCAGTATGTCAATTCTAAGTTTGGAGAGCCACTTGAGTATTCTGCATATCTTGATGTTTTCTCAGACACAAATAAGATTCCCCGCAAAATGAAAATGACCAGACAGTACCGAGAATATATGGTTAATCTTTTGGAGTATCTGATATACTTTTTCCAGCGTACCGAGCCACTGCAAGATCTTGATCGAATTTTCTCAAAGGTTGAAGCTGAATTTGAAGAAAATTGGGCCGCTGGAAGGGTACGGGGATGGGAAAATGACAATCAGGAAAATGGACATGTACCTCCTGAGACCATTGATCTTGATTATTATAGTACTGTTGAAGAGCTGATAGAAGTGGGTCCTGAAAGGTTAAAGGAGGCTCTGGCTGCATTAGGGCTTAAGACTGGTGGTACTATTCAGCAACGGGCTGAGAGGCTCTTCCTCACAAAGCACACACCTCTTGAAAAGTTGGAGAGGAAGCATTTTGCTAAGGGGACACGTGGTGTAGAAAAGAACAGGGTTGCTCCAGTTCCACAAGAAGATGGAAATTCTAAAGACATTGCATTGATGGAAGCTAAAATGGAAAAACTGTGTGATTTGTTAGAGGAGACAATTGCTCGAACAAAAGACAATGTTGTAAAGAAACAGGCCCTAACATATGAAGAAATGGAAGCAGAACGTGAGGAGGAAGAGACACAAGAGGACACTGAAAGCGAAGATGACGAGCAGCAGATATATAATCCCCTAAAATTACCAATGGGGTGGGATGGAAAACCTATACCTTATTGGCTATATAAGCTACATGGTCTGGGTCAGGAATTTAAGTGTGAGATATGTGGGAACTATAGTTATTGGGGGCGTCGGGCTTTTGAACGACATTTTAAAGAATGGCGCCATCAACATGGGATGCGGTGTCTTGGTATACCGAATACCAAGAATTTCAACGAAATCACATCAATTGAGGAAGCAAAGGAACTTTGGAAGAAGATACAGCAAAGACAAGGAGTGAACAAGTGGCGCCCAGATCTAGAGGAAGAGTATGAAGACAAAGAAGGCAACATCTATAATAAGAAAACATACACTGACTTACAGCGCCAGGGACTGATTTGA 1602 0.4313 MSSTVLEVTRAAHEEVERLERLIVKELQNEPGTNKERLYQSHRVRNMIDTIASTTEKLVRFHLIRFFLLFPFSHRYLACFSTFQIGIYEDNDNARKDEIAALGGQTASGINVFSAFYDRLKEIREYHRKHPVARVVDANDDYETVLKEEPQIEFSGEEALGRYLDLHELYYQYVNSKFGEPLEYSAYLDVFSDTNKIPRKMKMTRQYREYMVNLLEYLIYFFQRTEPLQDLDRIFSKVEAEFEENWAAGRVRGWENDNQENGHVPPETIDLDYYSTVEELIEVGPERLKEALAALGLKTGGTIQQRAERLFLTKHTPLEKLERKHFAKGTRGVEKNRVAPVPQEDGNSKDIALMEAKMEKLCDLLEETIARTKDNVVKKQALTYEEMEAEREEEETQEDTESEDDEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKKIQQRQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02470 533 MobiDBLite consensus disorder prediction 387 406 - -
Vimu10g02470 533 Coils Coil 355 375 - -
Vimu10g02470 533 MobiDBLite consensus disorder prediction 385 406 - -
Vimu10g02470 533 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 153 202 IPR031774 -
Vimu10g02470 533 Coils Coil 377 404 - -
Vimu10g02470 533 ProSiteProfiles Zinc finger matrin-type profile. 438 469 IPR000690 GO:0003676|GO:0005634|GO:0008270
Vimu10g02470 533 Pfam Replication stress response SDE2 C-terminal 250 328 IPR025086 -
Vimu10g02470 533 Pfam SF3a60/Prp9 C-terminal 414 533 IPR024598 GO:0000398|GO:0003723|GO:0005681
Vimu10g02470 533 PANTHER SPLICING FACTOR SF3A-RELATED 260 336 - -
Vimu10g02470 533 Pfam Splicing factor SF3a60 binding domain 106 131 IPR021966 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02470 Vimu-Chr10 35776645 35788341 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02470 1 533 C2H2 Transcription Factor Family AT5G06160 70.356 0.0 721
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02470 K12827 - gmx:100815393 923.309