Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02467 ATGCTTATCATTAATTTAAAGAGTGCAGGGATTTCCCGTGGTGCCCGTTACGCCATAGCGATCTGCATAGGCGTGCCAGCTATGTTATGCTCCTTTGGAGTATTGACTTGCATCTGCAGCTGGCTCAAAACGAGGGCTGACGAAACTGTGGCAGATTTTGAGGCTCTAGCGGGCTCAAGGCCCACATCAGTGTTGGGCCTGGACAGACCCACAATCGAATCGTACCCGAAAATAGTTATAGGTGAGAACAGACGGTTACCGAAGAAGGATGAGAAAATGTGCTCAATATGTCTCTCAGAGTACATCCCAAAAGAGACAGTGAAAAGCATACCTGAATGTGGACACTGCTTTCATGCACAATGCATCGATGAATGGCTTCCATTGAACGCCTCCTGTCCAATCTGCCGAACTTCTCCCCGAAAGTTTCCACAACCTCGTGCTCGATCATCAACATAA 456 0.4781 MLIINLKSAGISRGARYAIAICIGVPAMLCSFGVLTCICSWLKTRADETVADFEALAGSRPTSVLGLDRPTIESYPKIVIGENRRLPKKDEKMCSICLSEYIPKETVKSIPECGHCFHAQCIDEWLPLNASCPICRTSPRKFPQPRARSST 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02467 151 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 140 IPR013083 -
Vimu10g02467 151 SMART ring_2 94 135 IPR001841 -
Vimu10g02467 151 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 8 139 IPR046948 -
Vimu10g02467 151 Pfam Ring finger domain 92 136 IPR001841 -
Vimu10g02467 151 SUPERFAMILY RING/U-box 86 140 - -
Vimu10g02467 151 ProSiteProfiles Zinc finger RING-type profile. 94 136 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02467 Vimu-Chr10 35726356 35726828 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02467 1 139 C3H Transcription Factor Family AT5G07040 44.681 3.30e-34 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02467 - - vun:114163980 278.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02467 10 35726356 35726828 Vimu10g02467 10 35726356 35726828 ECH