Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02465 ATGGAGGAAAGAATGGTGGTAATAGAGTCGACAATGGAAGAAGTGACGACAGAGGTGCGAGCGATAACTCGCGAGTTCCGACGATGCTCCAGGAACCGAGATCGGAGCTCCGAAGGAAGATGTAATTTCGTCAATGCTGGACGCGGGCCACGACCGCCGAAAAACTCGAGGGAGGAATCGGAAGAAGACAGAGGAGAAGTTCGACGCAGTCGGAGGAAGCGCGTTGAACTACCTACGTTTGAAGGCAGAGAAACTCTTCGAACACTAGAGCGCGACGGAGAAGGAGAAGATGAACGAGCTTTTGGTTTCGCTACTGGCGGAAGAAAACCACGCATCCGACGTGGAAGAGTGGTGCGACAGAAGGGGAGCGTCGACGAGGACATCCGGGAGTTTGAAATCCTGGTGCCGCAAGCATGGGGAAAACCAGATCACTCCTCACTTGCTACCCCTGTCGATCTTGGAACTAGCATTATGACTGGTGTTGAGGCTGATGTGGCCACGGAGCGAAGACCAGATCCGTCCTTGTTGATTTGTGCTCAGTTAGGTCTTGAGCTGACAATATTGAATAGTGATTGCCCTCTTTATGACATAGTGACAGAACGAAAAGCTTCTGCAGATAGGACATTCAATTCCAAAAGGAACAGCTCTGTGAAAAAAAAGAGTGATGAGGAGATTTTGAACCCTCGGGAGAGGAGGATTATGGGTGGTTGTACTACTTCACTTAATGATGTTTCTCTTCCCTACTGGAATCAAGATGATGTGTATGGGGTTTTTGGGGGAGCTCATTGTGTGATTAAAGGGGGTTACAGTTCCGTTGTTGAGTCTCTGGGAGAAGGAATTACAATTCACTTGAACCACGTTGTAACAAATATGTCATATGGTATCAAGGAACCACGTTGTAACACTATATTTCTCGGTTTGTTGAGGAGGGAGGAGGAAAGTGGTATGGTTGTTGCCAAGAGCGACAACAACAGACAGTTTGGTGTCATAAGGGCATGTTTGAACAAGTTAATAAGAGAGGTTTTGGCTTGCAAATCAATTGCTAAAGATAGGTTGGATACTTCGGATGGTTTGAGGAGTGTAAAACTTGAGATGGAGATAATGGCTAGGCCATCCGGTCACCCCAGTGTTGAAGGCTTTGTTCACTTGGTGATGGAACGTTGTACTGGAGAAGAGTTTTTTCAGCTATTAGAGAAGCATGAATGGTTTTCAGAATCTGAAGCCAAGATTATCTTTAGGCACCTTATGCATGCGGTTTGGTATGGTCATGAAAATGGGGTTGTTCATAGAGATTTGAAGCCTGAGAACATTCTCTTAGCAACAAGATCCTCCTCATCTCCTATCAAATTGGCAAATTTTGGACTAGCAACCTACATTAAGGAGCGGGGTCAAAGTTATAAAATCAAAGTTTCTACAGCAAATGGCCACGAGTACATTGGAGCAACAGCTGAGGAGAGAAACAGTAGAAGTCACTGCTTTATGTTTAGGAATGTCAGGAAAATAATTGGGGCTCCTGTCCTTATTGCATTAGTGGTTGGTAAGGCAGCCATAGATGGTCAAATCTTGAGCTCTTCTGATCATGTTAAACATGCCTTGAAGGTTGCCTATGTGGTGACTGATTGGGTAGCCTGCCAAGAGCACCCAGATAATGTTGGAGGAGGGATGATGAGCGGACTACGAGAGTCTGCTCGTATCATTGACATAGTGAGTAATGGAAATGATTATATTGCTGAAGAACAGTTAGACACCGAAAAGGATGAAGTGAGGGATATAATAAAGAGACATGAGGCAGTGAGGTTGGCAGAATCTTCCCTTGCTAAGTCCATTTATGAAATGCTGGAAGTTAATAGAATTCAAGAAGAATGGAAGATATTGGAGGAGGATTTGCCACCACCCAAGCCTCTAGACTTGAATTGGAGGGCGTCACCTGGGATGAGGAGCACTACAGCAAATAACAGTTCCTTAACTTCAACCTTGAGGACAAGATTGATTTTGAGGGGTGGAGTAATATTAGGAATAAAAAGGGAGTAA 2031 0.4495 MEERMVVIESTMEEVTTEVRAITREFRRCSRNRDRSSEGRCNFVNAGRGPRPPKNSREESEEDRGEVRRSRRKRVELPTFEGRETLRTLERDGEGEDERAFGFATGGRKPRIRRGRVVRQKGSVDEDIREFEILVPQAWGKPDHSSLATPVDLGTSIMTGVEADVATERRPDPSLLICAQLGLELTILNSDCPLYDIVTERKASADRTFNSKRNSSVKKKSDEEILNPRERRIMGGCTTSLNDVSLPYWNQDDVYGVFGGAHCVIKGGYSSVVESLGEGITIHLNHVVTNMSYGIKEPRCNTIFLGLLRREEESGMVVAKSDNNRQFGVIRACLNKLIREVLACKSIAKDRLDTSDGLRSVKLEMEIMARPSGHPSVEGFVHLVMERCTGEEFFQLLEKHEWFSESEAKIIFRHLMHAVWYGHENGVVHRDLKPENILLATRSSSSPIKLANFGLATYIKERGQSYKIKVSTANGHEYIGATAEERNSRSHCFMFRNVRKIIGAPVLIALVVGKAAIDGQILSSSDHVKHALKVAYVVTDWVACQEHPDNVGGGMMSGLRESARIIDIVSNGNDYIAEEQLDTEKDEVRDIIKRHEAVRLAESSLAKSIYEMLEVNRIQEEWKILEEDLPPPKPLDLNWRASPGMRSTTANNSSLTSTLRTRLILRGGVILGIKRE 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02465 676 Pfam Flavin containing amine oxidoreductase 245 297 IPR002937 GO:0016491
Vimu10g02465 676 PANTHER FLAVIN MONOAMINE OXIDASE 144 311 - -
Vimu10g02465 676 Pfam Protein kinase domain 326 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02465 676 SUPERFAMILY FAD/NAD(P)-binding domain 150 293 IPR036188 -
Vimu10g02465 676 MobiDBLite consensus disorder prediction 52 103 - -
Vimu10g02465 676 Gene3D Transferase(Phosphotransferase) domain 1 325 479 - -
Vimu10g02465 676 ProSiteProfiles Protein kinase domain profile. 258 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02465 676 SMART serkin_6 326 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02465 676 MobiDBLite consensus disorder prediction 28 103 - -
Vimu10g02465 676 SUPERFAMILY Protein kinase-like (PK-like) 327 468 IPR011009 -
Vimu10g02465 676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 427 439 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02465 Vimu-Chr10 35716356 35718721 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02465 310 460 EF-hand Containing Proteins AT3G57530 36.875 2.68e-25 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vimu10g02465 Pkinase 5e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02465 - - vum:124848592 290.812