Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02456 TTGCGCGCCACTTCTTTGTCGAATTCTACCTTGTTCTTGAACTGGGCTACAGTGATGAATTTTCAGCAAGACAAATTTGTTAGCATTGTAGTTGTTATTGAATTCAATGTAGGTGTTTCATGCTTGCGGGTGCTTAATCATGGACTGAGTTTTATTGTTTCCATGATGTTTAGATTTCGTGATTGGAATTCAGAGAAGGATTCTGAGAGCAGCTCTCCTGCAATTCATGTAGAACGCCCAGGGGGAATCAAGAATACACTAAATTCAGTTTCTGAGAAGTTTGAAAGGGGTTTGGAATCCAGTTCAGAGGGGATGAAGAGATTTAGAAAATCATTCAAATCTCTTCCCTATAACAGAGTTCTCTCTGGAAGTTTTAGTTCTAGAAAGAAAATTCTTGATCCCCAGGGTCCTTTCCTTCAAAAGTGGAATAAGATATTTGTATTATCATGTCTTATTGCTGTGTCACTTGATCCTTTGTTCTTCTATGTTCCTGTGATCGATGATAACAATAAATGTCTTTCTCTGGACAGAAAAATGGAAATTACAGCAACTGTTTTAAGATCTTTCTCCGATATTTTTTATATAATCCATATAATTTTCCAATTTCGTACTGGATTCATTGCTCCCTCTTCTCGAGTATTTGGAAGAGGTGTTTTGGTGGAAGATGCTTGGGTAATAGCAATACGGTATCTATCATCATACTTCTTAATTGACATTCTTGCCGTTCTTCCCCTCCCACAGGTGGCAATTCTAATTATCATTCCCAAGTTGAGAGGCTCCGAATCACTGAATACAAAGACCTTGCTGAAATTTATTGTCTTCTTCCAGTATATCCCACGATTTTTGCGATTGATTCCATTATATAAAGAAGTTACTAGGACCTCTGGCATCCTCACTGAAACAGCTTGGGCTGGAGCTGCATTCAATCTCTTTCTGTACATGCTAGCAAGTCATGTTATTGGTGCCTTTTGGTACTTGTTTTCTATAGAAAGAGAAACCACATGTTGGCAAGATGCGTGTCGAGGAAATAGCACATGTAACACAGAAGCTATGTATTGTGATAATCATCAAGTTTTGGGCTCTATTTCAGTATTCCTGAATGCTTCTTGCCCAATACAGGACCAAAATACAACACTCTTTAATTTTGGAATATTTCTTGATGCCCTTCAATCTGGAGTTGTGGAGTCAAGAGATTTCCCACAGAAGTTCTTTTATTGTTTTTGGTGGGGCCTACGAAATTTGAGTTCCCTTGGTCAAAACCTTGCAACAAGTACCTATGTTTGGGAAATCTGCTTTGCAATTTTCATTTCAATTGCTGGTTTGGTATTATTTGCATTCCTCATTGGAAATATGCAGACATATTTGCAGTCAACGACTACCAGATTGGAGGAAATGAGAGTAAAAAGGAGAGATGCTGAACAGTGGATGTCTCATCGATTACTCCCTGACAGCCTGAGAGAAAGAATCAGACGACATGAGCAGTACAAATGGCAAGAAACCAGAGGTGTTGATGAAGACAACTTGATCCGAGATCTTCCAAAGGATTTGAGAAGGGATATTAAGCGTCATCTTTGCTTGGCTTTGCTGATGAGGGTGCCAATGTTTGAGAAAATGGATGAGCAACTTCTGGATGCAATGTGTGACAAACTCCAGCCAGTGCTATACACAGAAGAAAGCTGCATTGTGCGGGAAGGAGATCCTGTTGATGAAATGCTCTTCATAATGCGCGGCAAGCTATTGACTGTAACCACTAATGGTGGAAGAACAGGCTTCTTTAACTCTGAATACCTCAAGGCTGGTGACTTTTGTGGAGAGGAACTTCTCACATGGGCTTTAGATCCTCACTCCTCATCCAACCTTCCCATATCAACTAGAACTGTCCAAACTCTTTCAGAAGTAGAAGCATTTGCTCTAAAAGCTGATGACTTGAAGTTTGTTGCTTCACAGTTCCGGCGCCTTCATAGTAAGCAGCTTCGTCACACTTTCAGGTTTTATTCACAACAATGGCGTACATGGGCTGCATGTTTCATACAAGCAGCGTGGAGGCGTTATAGTAAAAAGAAGCTGGAAGAGTCTCTGAGAGAAGAAGAGAATCGTTTGCAAGATGCATTAGCCAAAGCAGGTGGTAGCTCACCTAGTCTAGGTGCCACAATATATGCTTCAAGGTTTGCAGCTAATGCACTCAGACTTTTACGTAGAAATAGCACAAGAAAGACCAGGCTGCCAGAAAGAATATCACCCATGCTGCTGCAGAAGCCTGCTGAGCCTGATTTTACTTCTGAAGAACAATAG 2292 0.4053 MRATSLSNSTLFLNWATVMNFQQDKFVSIVVVIEFNVGVSCLRVLNHGLSFIVSMMFRFRDWNSEKDSESSSPAIHVERPGGIKNTLNSVSEKFERGLESSSEGMKRFRKSFKSLPYNRVLSGSFSSRKKILDPQGPFLQKWNKIFVLSCLIAVSLDPLFFYVPVIDDNNKCLSLDRKMEITATVLRSFSDIFYIIHIIFQFRTGFIAPSSRVFGRGVLVEDAWVIAIRYLSSYFLIDILAVLPLPQVAILIIIPKLRGSESLNTKTLLKFIVFFQYIPRFLRLIPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVIGAFWYLFSIERETTCWQDACRGNSTCNTEAMYCDNHQVLGSISVFLNASCPIQDQNTTLFNFGIFLDALQSGVVESRDFPQKFFYCFWWGLRNLSSLGQNLATSTYVWEICFAIFISIAGLVLFAFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPDSLRERIRRHEQYKWQETRGVDEDNLIRDLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDAMCDKLQPVLYTEESCIVREGDPVDEMLFIMRGKLLTVTTNGGRTGFFNSEYLKAGDFCGEELLTWALDPHSSSNLPISTRTVQTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYSKKKLEESLREEENRLQDALAKAGGSSPSLGATIYASRFAANALRLLRRNSTRKTRLPERISPMLLQKPAEPDFTSEEQ 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02456 763 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 110 758 - -
Vimu10g02456 763 Pfam Cyclic nucleotide-binding domain 555 645 IPR000595 -
Vimu10g02456 763 SUPERFAMILY cAMP-binding domain-like 463 656 IPR018490 -
Vimu10g02456 763 SUPERFAMILY Voltage-gated potassium channels 133 456 - -
Vimu10g02456 763 ProSiteProfiles cAMP/cGMP binding motif profile. 534 618 IPR000595 -
Vimu10g02456 763 SMART cnmp_10 534 665 IPR000595 -
Vimu10g02456 763 Gene3D Jelly Rolls 532 652 IPR014710 -
Vimu10g02456 763 Gene3D Helix hairpin bin 460 525 - -
Vimu10g02456 763 Coils Coil 686 706 - -
Vimu10g02456 763 CDD CAP_ED 534 665 IPR000595 -
Vimu10g02456 763 FunFam Cyclic nucleotide-gated ion channel 1 532 650 - -
Vimu10g02456 763 Gene3D - 145 458 - -
Vimu10g02456 763 FunFam Cyclic nucleotide-gated ion channel 1 461 525 - -
Vimu10g02456 763 Pfam Ion transport protein 142 461 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02456 Vimu-Chr10 35627686 35639103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02456 49 762 Ion Channels AT5G53130 78.830 0.0 1145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02456 K05391 - gmx:100817516 1335.09