Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02454 CGGGGGTTCCATTTTCTGAGTAGTAAATTGGGGGAAATTAGATTCTTCACAGTTGTTGAGGGCTTTGACAGATGGGTCATTGTACATGGTGACGGTCTTCTCAGATTCAAATTCCTGAAACGTCACACCCTTCTACTCTCTCCTCACATCGCCAATCAGGTAATTTCACTCACACCCTCACTCCTCTTCTTCCTCACTGCGCCAACGCCTCACCGCTTTTTTCTCCGCTTTTCAATTCCCCTAGATTCGCCACGCCCGACCTTCCACCTAGGGTTTCCACCTCAAATTCCAGATTTTCTCCTCCGTCAATTTCGACCGTTGCCTCCTCTTTTCAAATGCGCTGCTCCTGTAGATCCGTGGCGGGATTCGCTTCACTTTGAATTTCCTTCTCCCAAAAAACAAATACAGTTATTCGTTGTGTTGTGTTGCGTTGAGTTTGCAAATGAATGGATGCTTGGTGGAAGGGATTGGCCTTCCTCTTGTAGGTGCGATGGGGCCGGAATTCGAACGGCGGCTGTTAGTTTAGACTACTGGATAATGGAGTGCAACAAAGATGAGGCAGTTAGGGCCAAAGAAATAGCAGAGAGGAAATTTTCAGAAAGGGAATATGTTGGTGCAAAGAAATTTGCTCTCAAGGCTCAAAATCTGTATCCTGATTTGGAGGATATTACCCAGCTCTTGACAACAATTGATATTTATATATCTGCTGACAATAAAGTAAGCGGAGAAATGGATTGGTATGGTATACTTGGAGTGAGTCCCTTTGCTGATGAGGAGACTGTCAGGAAGCAATACAGGAAGCTGGCTCTCACCCTTCACCCTGACAAAAACAAGTCTTTGGGCGCAGAGGGTGCATTTAAGCTGGTTTCAGAGGCTTGGAGTTTGTTATCAGATAAGACCAAGAGACTCGAATATAACCAGAAGAGGAGTTTGAAAGGATTCCAGCATAATACTTCCAACCATGTTGGATCTAAATCAGATGCACCCAGTTCAAATGGTTTTTACAATTTAAAGAAGAATGTTACCTCAAATGTCAGGACTGGAAATAATAATGGTCGGGGACCTTCAACTGCAGTTCCTCCTCCACATAAAAAAGCTGATACCTTTTGGACAATCTGCAATCGGTGCAGGACACATTATGAATATCTCAGGATTTATTTGAACCACACCCTTTTATGTCCAAACTGTAATGAAGCTTTTGTTGCTGTAGAGAGGGGTCCACCACCAAATGTTTTTAAGCCACCAAATTGGTCTTCTCATCAACAACGACATCAAAATTCTCAACACCATGCTGGAAGTAATAATACAAACTTTCAGTGGGGTTCTCACAATAGAATGGCTGGTTTTGGTAGCACAGATGGATCAACATCTGTTGCAGCTCAAGCTGCAAGTGTTGTGCAGCAGGCAAGTGAGAAAGTAAGGAGAGATGGTTCCTTTCACAAAGCTGAAAAACCTATGAAAAAAAGGAGGACAGATGATATTCGAGTTAATGGCTATCAAGGATACATGGCTAATCATATGACTGGGGGACATGGAGCAGCTGGCCTGGGAAGCTTTTCTGAATCAGGAAAGGCTAACTTGGAAGCAGAAAGGAATTATGGTTTTTCAGGTCTGCCTGGCAAGCATTGCAGCACAAGGGAATTGTCAATGTTTGAATTACGAAACATGTTGATGGACAAGTCACGCAATGTAATTCGTAAGAAACTTCAAGAATGGAAATCAAAGGCTGAAGCCAAGATTAACAGGGATAAAGAAAATAAGAGACAGAAAAGCACATTAACAACTGGTTCAGAAAAGCTGAGAGAGCCTGCTGTCAATGGTAACAGGCATCCAAACATTGATTCTTTCCCTGTCAGAAGTGATCAAGCTTATGTTACCATCAATGTTCCAGACCCTGATTTTCATAACTTTGATTTGGACAGAGATGAAAGTTCCTTTGCTGAGGACCAGGTGTGGGCTGCGTACGATGATGATGATGGAATGCCTCGATATTACGCTAGAATTCACAAGGTGATCTCTATAAAGCCATTTAAAATGAGGATCAGTTGGCTTAATTCTCGAAGCAACAGCGAATTGGGCCCAATTGATTGGGTGGGCTCTGGTTTTTATAAGACTTGTGGGGATTTCAGAACTGGCAAGCACGAAATATCTGAATCATTAAATTCTTTCTCTCACAAGGTTAGGTGGACAAAAGGCACGAGAGGAGTTGTTCGCATCTTTCCTGGAAAGGGGGAAGTCTGGGCTCTTTACAGGAACTGGTCTCCTGATTGGAATGAACATACCCCAGATGAAGTGATACACAAGTATGATATGGTGGAGGTGCTCGAAGATTTCGATGAAGAACAGGGCATATTAGTTACCCCTCTAGTTAAGGTATCTGGTTTTAGGACTGTGTTTCAAAGGCATGCAGATCGTGATCAGGAGAGGAGGATTCTTAAAGAGGAAATGTTTCGATTCTCTCATCAGGTTCCTAATTGCTTGTTGACTGGCCAAGAAGCTCAGAATGCTCCAAAGGGTTGTCGAGAGTTGGATCCAGCCGCTACTCCTTTAGACCTCCTTCAGATAACCACAGAAGCTAGTGAGACATCAGATAATGCATAG 2601 0.4321 RGFHFLSSKLGEIRFFTVVEGFDRWVIVHGDGLLRFKFLKRHTLLLSPHIANQVISLTPSLLFFLTAPTPHRFFLRFSIPLDSPRPTFHLGFPPQIPDFLLRQFRPLPPLFKCAAPVDPWRDSLHFEFPSPKKQIQLFVVLCCVEFANEWMLGGRDWPSSCRCDGAGIRTAAVSLDYWIMECNKDEAVRAKEIAERKFSEREYVGAKKFALKAQNLYPDLEDITQLLTTIDIYISADNKVSGEMDWYGILGVSPFADEETVRKQYRKLALTLHPDKNKSLGAEGAFKLVSEAWSLLSDKTKRLEYNQKRSLKGFQHNTSNHVGSKSDAPSSNGFYNLKKNVTSNVRTGNNNGRGPSTAVPPPHKKADTFWTICNRCRTHYEYLRIYLNHTLLCPNCNEAFVAVERGPPPNVFKPPNWSSHQQRHQNSQHHAGSNNTNFQWGSHNRMAGFGSTDGSTSVAAQAASVVQQASEKVRRDGSFHKAEKPMKKRRTDDIRVNGYQGYMANHMTGGHGAAGLGSFSESGKANLEAERNYGFSGLPGKHCSTRELSMFELRNMLMDKSRNVIRKKLQEWKSKAEAKINRDKENKRQKSTLTTGSEKLREPAVNGNRHPNIDSFPVRSDQAYVTINVPDPDFHNFDLDRDESSFAEDQVWAAYDDDDGMPRYYARIHKVISIKPFKMRISWLNSRSNSELGPIDWVGSGFYKTCGDFRTGKHEISESLNSFSHKVRWTKGTRGVVRIFPGKGEVWALYRNWSPDWNEHTPDEVIHKYDMVEVLEDFDEEQGILVTPLVKVSGFRTVFQRHADRDQERRILKEEMFRFSHQVPNCLLTGQEAQNAPKGCRELDPAATPLDLLQITTEASETSDNA 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02454 866 ProSitePatterns Nt-dnaJ domain signature. 286 305 IPR018253 -
Vimu10g02454 866 ProSiteProfiles dnaJ domain profile. 245 309 IPR001623 -
Vimu10g02454 866 MobiDBLite consensus disorder prediction 469 489 - -
Vimu10g02454 866 MobiDBLite consensus disorder prediction 314 364 - -
Vimu10g02454 866 MobiDBLite consensus disorder prediction 575 613 - -
Vimu10g02454 866 Pfam Domain of unknown function (DUF3444) 626 832 IPR024593 -
Vimu10g02454 866 PRINTS DnaJ domain signature 247 265 IPR001623 -
Vimu10g02454 866 PRINTS DnaJ domain signature 265 280 IPR001623 -
Vimu10g02454 866 PRINTS DnaJ domain signature 281 301 IPR001623 -
Vimu10g02454 866 Gene3D DnaJ domain 242 353 IPR036869 -
Vimu10g02454 866 SUPERFAMILY Chaperone J-domain 234 305 IPR036869 -
Vimu10g02454 866 MobiDBLite consensus disorder prediction 314 356 - -
Vimu10g02454 866 MobiDBLite consensus disorder prediction 473 489 - -
Vimu10g02454 866 PANTHER BNAC03G44070D PROTEIN 180 849 - -
Vimu10g02454 866 CDD DnaJ 245 298 IPR001623 -
Vimu10g02454 866 Pfam DnaJ domain 245 306 IPR001623 -
Vimu10g02454 866 SMART dnaj_3 244 301 IPR001623 -
Vimu10g02454 866 MobiDBLite consensus disorder prediction 575 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02454 Vimu-Chr10 35587439 35591642 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02454 183 408 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 30.769 7.77e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02454 - - gmx:100814722 1277.31