Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02452 ATGAATTATATATTTCTTCTCCTTGTCACTTTCAAGATTATCAAGAGGAAGTTGATGCAGTTAAAAGAGATTATGGGATTTCAAGCATCCCATTCACATAGTACTAAATGGATACCACAACCAATTTTCAAAGCAAAGGAGGTCCCAATTGATGTTCATGAAAATTCATTAATTCAAAGGACCACACCGAATTTGATTGATCATTCCCAAACCAATTCCAACTACATTTTGTCTGGCTATGATTCATGGGTGGCAAGACACCCTTCAGCATTGAACTCATTTGAAAGGTTGATGAAAAATGCCACAGGGAAAAGGATTATCCTTTTTTTGGATTATGACGGTACCTTATCCCCAATTGTAAATGATCCTGATCGTGCTTTCATGTCTGAAGAGATGCGTGCTACAGTACATGAAGTTGCTACTTATTTTCCAACAGCGATAATTAGTGGAAGAAGTAGAGATAAGGTACAAGATTTCGTGAAGTTGAACAATTTGTATTATGCTGGGAGCCATGGCATGGACATAATGGCACCATCAGTGCCAATTACATCCTCTGCAGGGGAGCATATTGAAATTTCCATTAACAAAAGCTGCACTGAAGTTCCTTTTCAACCTGCCAAGAAGTATTTGCCAGCAATTCGAGAGATATTAAGAATACTAAGGGATGAAGTAGAGCAAATCAAAGGAGCAATGGTTGAGGACAACGGATTCTGTGTCTCTGTACACTTCCGGCAGGTCCAAGAAAAGGATTATGGTCTGTTGGAAGAGAAAGTGAAGTCTGTGCTTGAAAAGCATCCACAATTTTGCTTGACAGAGGGTAAAAAGGTTATGGAAATAAGGCCTTCTATAAAGTGGAACAAAGGAAATGCTGTAGAATATTTTCTTGACACGTTAGGATTAAGCAGTTGCAATGATATCCTTCCTGTGTATATTGGCGATGACAGAACTGATGAAGATGCTTTTAAGGTCATACAGAGTAGAGAGCAAGGTTATCCAATCATAGTGTCTTCAGTTCCAAGAGAAACTAACGCTCTGTACTCTTTGCGTGACCCATCGGAAGTACTAATGTTTTTGTCGCGTTTGGCAAAATGGAGGAAAACCGCTTACTAA 1110 0.3901 MNYIFLLLVTFKIIKRKLMQLKEIMGFQASHSHSTKWIPQPIFKAKEVPIDVHENSLIQRTTPNLIDHSQTNSNYILSGYDSWVARHPSALNSFERLMKNATGKRIILFLDYDGTLSPIVNDPDRAFMSEEMRATVHEVATYFPTAIISGRSRDKVQDFVKLNNLYYAGSHGMDIMAPSVPITSSAGEHIEISINKSCTEVPFQPAKKYLPAIREILRILRDEVEQIKGAMVEDNGFCVSVHFRQVQEKDYGLLEEKVKSVLEKHPQFCLTEGKKVMEIRPSIKWNKGNAVEYFLDTLGLSSCNDILPVYIGDDRTDEDAFKVIQSREQGYPIIVSSVPRETNALYSLRDPSEVLMFLSRLAKWRKTAY 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02452 369 Gene3D - 203 369 IPR023214 -
Vimu10g02452 369 Gene3D - 106 197 IPR023214 -
Vimu10g02452 369 NCBIfam trehalose-phosphatase 104 363 IPR003337 GO:0003824|GO:0005992
Vimu10g02452 369 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 58 367 IPR044651 GO:0004805|GO:0005992
Vimu10g02452 369 SUPERFAMILY HAD-like 107 366 IPR036412 -
Vimu10g02452 369 Pfam Trehalose-phosphatase 109 352 IPR003337 GO:0003824|GO:0005992
Vimu10g02452 369 CDD HAD_TPP 108 354 - -
Vimu10g02452 369 FunFam Trehalose 6-phosphate phosphatase 211 369 - -
Vimu10g02452 369 NCBIfam HAD-IIB family hydrolase 107 324 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02452 Vimu-Chr10 35558524 35560908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02452 104 362 Trehalose Biosynthesis Gene Families AT1G70290 27.273 6.49e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02452 K01087 - gmx:100819120 620.928