Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02437 ATGGCAACAAAGCAAGTGCAAAGATCTGATGAGGACCCTACAATTTTTGAAATCAATTACCGAGGAAATCACACATGCACGGTGGCCCACAGCGTGGGTACTTCTTCAATAATTCCACTAGAAAATCAAGAACCAACTCTGAACAACAAAAATCAACAGCAGAATATCTTGCAGAGCCTTGAGCAGCAACCAAATGATTTACTTTTGAGTCTCCGAGAAGGGTTGAGAGTCCAAACACAAAACCTTGATTCCACTGACCAATCATTTTCTCCATTCCGTTTCCCTTTATCAACAAACATGAAAAATGAAGGTCAGGTTTTCCCTCCCCATGTGCTTGAAAATTTCAGTTCTCCTTATATATCACCTGCTACATCCGGAATCAGCCACTTTTCGGTGTCTCCAACTGGGGTGAGCAATTTTGGAGGGAACCAAAATTTGGCAACTTTTGAGTCTCATATCAATGACATGATCCCAGCTGTTACTTCTGCTCCAAATTCAGAAGCTGTTACTTTAGAGTTTCCTTTCGACCCTTTTGGATTTGATGGTCAGAACCTTAGATTCGGTAACCCATGA 573 0.4154 MATKQVQRSDEDPTIFEINYRGNHTCTVAHSVGTSSIIPLENQEPTLNNKNQQQNILQSLEQQPNDLLLSLREGLRVQTQNLDSTDQSFSPFRFPLSTNMKNEGQVFPPHVLENFSSPYISPATSGISHFSVSPTGVSNFGGNQNLATFESHINDMIPAVTSAPNSEAVTLEFPFDPFGFDGQNLRFGNP 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02437 190 Pfam WRKY DNA -binding domain 2 26 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu10g02437 190 Gene3D WRKY domain 1 29 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu10g02437 190 SUPERFAMILY WRKY DNA-binding domain 1 28 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02437 Vimu-Chr10 35364022 35364594 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02437 1 106 WRKY Transcription Factor Family AT4G23810 39.623 1.43e-14 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu10g02437 WRKY 1.7e-05 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02437 - - gmx:100812027 263.462