Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02436 TTTCCCGGAGTCCATCCATCCATCCAATTGGAAACTCCAAAACCCTCCAACATGGACGACAACTTATGTGACATTTTCGACGACAAAGAGTTTGGGAGCGACCATTTTGGTGGGGACGATCTCTTCGCCATTTTGGAGAGCCTAGAATCGGACTTCACCCATTTCCCTCCCATTAACGAAGAAGCTGTTGCTGTCTCTAAAGAGAACGAGGATGTCTCAAGATTGGTTTCTCAAAAGTCTACCTCGTCAAGTGCTCCACAAGATTATTCCGAAACTGAGTTTGAAACCTCATCAAAAACCAAGAGACAGAAGCTTACTCCTACCACGCCAGAGGAAGCAAACCCAGATGGACAACAAAGGATGTCTCACATCACCGTTGAACGCAACCGGAGAAAGCAAATGAATGAACACTTGTCCGTGTTGAGGTCGCTTATGCCTTGCTTTTATGTCAAACGGGGAGATCAAGCATCCATAATCGGAGGTGTGGTTGATTACATCAACGAGTTGCAACAAGTGCTCCAAGCCCTGGAGGCCAAGAAACAAAGGAAAGTTTACAGTGAAGTGCTAAGCCCTAGGCTTGTTTCAAGCCCAAGGCCCTCAGCTCTGAGTCCTCGGAAACCACCTCTGAGCCCGAGATTAAACTTGCCCATTAGCCCAAGAACTCCACAACCAGGAAGTCCTTACAGGCCAAGGTTGCAACAAGGCTACAACAACATGATTTCACCAACCATGTCCAACTCTCTCGACCCTTCTCCCACTTCTTCTGCTAATTCCTCTATCAATGACAACATCAACGAGCTTGTTGCAAACTCCAAATCCGCCACTGCTGATGTGGAGGTCAAGTTTTCAGGGCCCCACGTTCTTCTCAAAACGGTGTCTCAAAGAATTCCCGGACAAGCTCTGAAGATAATCACAGCACTTGAAGATCTCGCGCTAGAAATCCTCCATGTCAACATTAACTGTGCTGCTGATGATACCATGCTAAACTCATTCACTATCAAGGTACACTTCGAATTGGAACACAAAAGTTAA 1032 0.4641 FPGVHPSIQLETPKPSNMDDNLCDIFDDKEFGSDHFGGDDLFAILESLESDFTHFPPINEEAVAVSKENEDVSRLVSQKSTSSSAPQDYSETEFETSSKTKRQKLTPTTPEEANPDGQQRMSHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVDYINELQQVLQALEAKKQRKVYSEVLSPRLVSSPRPSALSPRKPPLSPRLNLPISPRTPQPGSPYRPRLQQGYNNMISPTMSNSLDPSPTSSANSSINDNINELVANSKSATADVEVKFSGPHVLLKTVSQRIPGQALKIITALEDLALEILHVNINCAADDTMLNSFTIKVHFELEHKS 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02436 343 MobiDBLite consensus disorder prediction 101 122 - -
Vimu10g02436 343 MobiDBLite consensus disorder prediction 192 259 - -
Vimu10g02436 343 Coils Coil 162 182 - -
Vimu10g02436 343 SMART finulus 124 175 IPR011598 GO:0046983
Vimu10g02436 343 MobiDBLite consensus disorder prediction 74 122 - -
Vimu10g02436 343 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 117 191 IPR036638 GO:0046983
Vimu10g02436 343 MobiDBLite consensus disorder prediction 227 259 - -
Vimu10g02436 343 Pfam Helix-loop-helix DNA-binding domain 119 170 IPR011598 GO:0046983
Vimu10g02436 343 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 118 169 IPR011598 GO:0046983
Vimu10g02436 343 CDD bHLH_AtFAMA_like 121 192 - -
Vimu10g02436 343 MobiDBLite consensus disorder prediction 201 226 - -
Vimu10g02436 343 MobiDBLite consensus disorder prediction 75 93 - -
Vimu10g02436 343 PANTHER TRANSCRIPTION FACTOR FAMA 21 340 IPR044283 GO:0003700|GO:0010052
Vimu10g02436 343 FunFam Transcription factor SPEECHLESS 110 184 - -
Vimu10g02436 343 Gene3D - 110 183 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02436 Vimu-Chr10 35351923 35353592 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02436 18 336 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 52.691 4.09e-93 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu10g02436 HLH 7.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02436 K20558 - gmx:100777437 531.946