Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02429 ATGGAAGACAGTATCCTATGTAAACACACACTCCATCACACCGTCACCAAGAAGCTCCTCTCACCCAAAAAATCCCAAACCAATTCAAACACAGACCGCAGAGTAGTCCGGATATCATACACTGATCCCGATGCCACCGACTCTTCCGGCGACGACGAACCCTTTCCCTTCGCCCGCCAGAGAATCAAGCGCTATGTCAACCACATTGAGATACAAACCGCCACCACCGCCGCCCCCAACGTCCTTCCCAATGCTCGCAAGAGGCCCGCCGCCGAACCATGCCGCCGCCAAGTCAAGCTCCACTCCGGCAAGAAGTTCCGCGGCGTCCGCCAGAGACCGTGGGGGAAATGGGCCGCCGAGATTCGAGATCCGGCCAGAAGGGTGCGTCTCTGGTTGGGGACTTACGACACTGCCGAAGAAGCGGCCATGGTCTACGACAATGCCGCTATCAGGCTTCGCGGCCCGGACGCCTTGACAAACTTCGTAACGCCGCCGCAAAAAGAACCTCCGGCGGCTGCGGATGCGGAGGTTCCCGAATTGAAGGTCGGCGTGACCGAAGAGGCCTCTGGGTCCGGGTACGACTCCGGCGACGATCATTGCCACCACAACCTCTCCTCCCCCACTTCGGTGCTCCACTTCCGAAGCAACTCGAGCGAAGAGAATTCAGAGAAAGCCGAGGAAGGGTTGAGAGAGTGCCAGGGTGAGACCGAAACGAGTTGGTTCGACGAAAAGGGAGAGTTTATGGCGCTGGAGAACTTGCCAGAGTGGAACGACGTGTTTAATTTCGAAGCCCCCGAGTACCCTCTCGTGTTTGAAGAAGAGCGCGTGGTAGATGAGTCCCAGATGTTGGGCGAAACGGTGGCGTTTTCCCCGGGCGAAGCTTTCAGCGACACAAGTAGTATTTTGCTTGCGGATTCCCTCATAGATTTCGACAAAGCGTGCTCTCCATCCACCTTCTGCCAAGTGGACGATTACTTCCAAGACATTTTGCTAGCTTCTGATCCTCTCGTTCTGCTCTGA 1020 0.5647 MEDSILCKHTLHHTVTKKLLSPKKSQTNSNTDRRVVRISYTDPDATDSSGDDEPFPFARQRIKRYVNHIEIQTATTAAPNVLPNARKRPAAEPCRRQVKLHSGKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAAMVYDNAAIRLRGPDALTNFVTPPQKEPPAAADAEVPELKVGVTEEASGSGYDSGDDHCHHNLSSPTSVLHFRSNSSEENSEKAEEGLRECQGETETSWFDEKGEFMALENLPEWNDVFNFEAPEYPLVFEEERVVDESQMLGETVAFSPGEAFSDTSSILLADSLIDFDKACSPSTFCQVDDYFQDILLASDPLVLL 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02429 339 PRINTS Ethylene responsive element binding protein signature 106 117 IPR001471 GO:0003700|GO:0006355
Vimu10g02429 339 PRINTS Ethylene responsive element binding protein signature 128 144 IPR001471 GO:0003700|GO:0006355
Vimu10g02429 339 MobiDBLite consensus disorder prediction 217 235 - -
Vimu10g02429 339 SUPERFAMILY DNA-binding domain 105 162 IPR016177 GO:0003677
Vimu10g02429 339 MobiDBLite consensus disorder prediction 202 216 - -
Vimu10g02429 339 CDD AP2 104 161 IPR001471 GO:0003700|GO:0006355
Vimu10g02429 339 FunFam Ethylene-responsive transcription factor 2 104 163 - -
Vimu10g02429 339 MobiDBLite consensus disorder prediction 21 54 - -
Vimu10g02429 339 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 33 241 - -
Vimu10g02429 339 SMART rav1_2 105 168 IPR001471 GO:0003700|GO:0006355
Vimu10g02429 339 MobiDBLite consensus disorder prediction 21 36 - -
Vimu10g02429 339 Gene3D AP2/ERF domain 104 163 IPR036955 GO:0003700|GO:0006355
Vimu10g02429 339 ProSiteProfiles AP2/ERF domain profile. 105 162 IPR001471 GO:0003700|GO:0006355
Vimu10g02429 339 Pfam AP2 domain 105 154 IPR001471 GO:0003700|GO:0006355
Vimu10g02429 339 MobiDBLite consensus disorder prediction 187 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02429 Vimu-Chr10 35240164 35243409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02429 7 220 AP2-EREBP Transcription Factor Family AT4G27950 48.416 1.13e-56 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu10g02429 AP2 8.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02429 - - gmx:100807598 509.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02429 10 35240164 35243409 Vimu10g02429 10 35240164 35243409 ECH