Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02417 ATGTCAAGCAATGCATTAACTTTTTTTATCTTGTTTCTTAATATCTCCTTGTGTCCTTCCATCTCTGCTCTGAACCAGGAAGGCCTCTCTCTACTGTCATGGCTTTCAACCTTTAACTCCTCCGACTCTGTCGCTGCCTTCTCTTCATGGGATTCAACCAACAAAGATCCTTGCACATGGGATTACATAACATGTTCCAAAGAAGGGTTTGTGTCAGCGATCATAATAACATCCATAGATATGCGTAGCAGCTTCCCCACTCAGGTCCTTTCTTTTGGCCACCTCACCACTCTTGTCATCTCAAATGGAAATCTCACAGGTGAGATTCCAGGTTCAGTGGGAAACTTGTCCTCCTTGGTCACTTTGGATCTTAGCTTCAATGCTTTGTCAGGAAGCATTCCAGAAGAAATAGGAATGCTAGCTAAGCTGCAGTTGTTATTGTTGAATTCCAATTCCTTGAAGGGTGGAATTCCAACTACAATTGGAAACTGTTCAAAGCTTCGGCATCTGGCACTTTACGACAACCAGCTGTCTGGAATGATACCTGGAGAAATAGGCCAGTTGAGTACTCTCGAAACTCTTAGAGCAGGAGGAAATCCAGGTATTTATGGAGAAATTCCAATGCAGATATCAGACTGCAAGGCCCTTGTTTTTCTGGGACTTGCAGTTACTGGGGTTTCTGGGGAGATTCCACCGAGTATAGGGGAGCTTAAAAATCTCAAGACACTTTCAGTCTACACGGCGCATCTCTCAGGTCATATCCCAGCAGAGATTCAGAACTGCTCAGCCTTGGAGGATTTGTTTCTGTATGAAAACCAGCTTTCTGGAAACATTCCTTATGAATTGGGCTCCATGCAAAACCTGAGGAGGGTGTTGCTGTGGCAGAACAATTTAACTGGGACCATTCCGGAAAGTCTTGGGAACTGTTCAAATCTCAAGGTTATAGATTTCTCTTTGAATTCTTTGGAGGGTCAGATACCTGTGACTCTCAGTAATCTACTCTTTCTGGAGGAGTTTCTTTTGTCTGATAATAGTATTTATGGAGAAATACCTTCCTATCTTGGCAACTTTTCCAGGCTAAAGCAACTTGAATTGGATAACAACAAATTCTCCGGGAACATTCCACCTGTTATGGGACAACTGAAGGAACTCACCCTCTTTTATGCCTGGCAGAATCAACTGAATGGAAGTATACCAACAGAACTATCCAACTGTGATAAACTTGAAGCACTTGATCTTTCGCACAATTTCCTCACTGGCTCCATTCCAAGTGCACTCTTTCATCTGCGGAATTTGACTCAGTTGTTGCTGATATCAAACAGACTTTCAGGTCAAATTCCAGCTGATATTGGCAGTTGCACTAGTTTGATCAGGTTACGACTGGGATCAAATAACTTTACTGGTCGAATTCCACCAGAAATAGGTCATTTAAGAAGTTTGAGCTTCCTTGAGTTGTCAAATAATCTACTCAGTGGAGATATTCCCTCTGAGATAGGTAACTGTGCTCATCTAGAATTGCTTGACTTGCACAGCAATGTGCTGGAAGGAACCATTCCTTCATCGTTGAAATTCCTAGTTGGTCTTAATGTCTTAGATCTTTCGGCAAACAGAATAACGGGAAGCATTCCGGAGAATTTGGGTAAACTTAAATCTCTAAATAAGTTTATTTTAAGTGGAAACATTATCTCTGGTGTAATCCCAGGGACACTGGGGCAGTGTAAGGATTTGCAGTTGCTGGATATAAGTAACAATAAGATCACTGGTTCTATTCCAGATGAGATTGGTCATTTGCAAGGATTAGATATCCTCTTGAACTTGAGTTGGAATTCTCTGAGTGGCCCCATTCCACAGACCTTCTCAAATCTCTCAAAACTATCCATCTTGGACCTCTCTCACAACAAGCTCACAGGTACACTCACGGTATTGGTTAGTCTTGACAATCTTGTGTCTCTAAATGTCTCCTATAATAGCTTTTCTGGTTCTCTTCCTGATACAAAGTTTTTCCGGGATCTACCCTCCGCTGCATTTGCTGGTAACCCTGACCTTTGCATTAGCAAGTGTCATACAAGTGAAAATGGCCAGGGCTTCAACAAGTCAATAAGAAATGTTATTGTCTACACTTTCCTTGGGGTTATTTTAACTTCTATTTTTGTCACTTGTGGAGTAATTTTAGCTCTCCGGATTCATGGGGGAAACTTTGGCAGGAATTTTGATAGTGATGAAATGGAATGGGCTTTCACTCCATTCCAGAAAGTCAACTTCTCCATCGATGACATTTTAACAAAGTTGTCAGAATCAAACATTGTCGGAAAGGGTTGTTCAGGAATTGTTTATCGTGTAGAGACTCCAACGAAACAGATTATTGCAGTGAAGAAGCTATGGCCAATAAAGAAGGAAGAGCCACCAGAGAGAGATCTGTTTACTGCAGAAGTTCAGACCCTTGGATCAATAAGACACAAGAATATAGTGAGACTTTTAGGTTGCTGTGACAATGGAAGAACTAGATTGCTCTTGTTTGATTACATATGCAATGGAAGTTTGTTCGGACTGCTTCATGAAAAGAGATTGTTCTTGGATTGGGATGCCAGGTATAAGATCATACTGGGAGCGGCTCATGGTTTAGAATATCTTCATCATGATTGTATCCCTCCAATCGTCCACAGGGACATTAAGGCTAACAACATCTTAGTAGGTCCACAATATGAAGCTTTTCTTGCAGATTTTGGCCTTGCAAAGCTCGTGAGTTCCTCAGAGTGTTCAGGGGCCTCGCATACAGTAGCAGGTTCTTATGGATACATTGCTCCTGAATATGGATACAGTTTAAGGATCACAGAAAAGAGTGATGTGTACAGTTTCGGTGTTGTACTTCTTGAGGTCTTAACGGGGATGGAACCAACTGATAACAGTATTCCAGAGGGTGGCCACATTGTCACATGGGTTAGCAACGAAATCCGAGAGAAAAGAAGGGAATTTACGTCTATCCTTGATCAGCAACTAGTATTGCAGAGTGGAACAAAAACCTCTGAGATGCTTCAAGTTCTAGGAGTGGCTCTCCTCTGCGTGAATCCATCACCAGAAGAAAGGCCTACAATGAAAGACGTAACAGCAATGCTCAAGGAGATCAGGCTTGAAAGTGATGACTTCGAAAAACCAAACTTTCTCCATAAAGGCATGGTTGTGAATCCAAAAGCAGCAGTTCACTGTTCAAGTTTCTCCAGATCATGTGAACCTTTAATAATAGAATCCACATCTTCTTCTTCTTCTTAG 3267 0.4175 MSSNALTFFILFLNISLCPSISALNQEGLSLLSWLSTFNSSDSVAAFSSWDSTNKDPCTWDYITCSKEGFVSAIIITSIDMRSSFPTQVLSFGHLTTLVISNGNLTGEIPGSVGNLSSLVTLDLSFNALSGSIPEEIGMLAKLQLLLLNSNSLKGGIPTTIGNCSKLRHLALYDNQLSGMIPGEIGQLSTLETLRAGGNPGIYGEIPMQISDCKALVFLGLAVTGVSGEIPPSIGELKNLKTLSVYTAHLSGHIPAEIQNCSALEDLFLYENQLSGNIPYELGSMQNLRRVLLWQNNLTGTIPESLGNCSNLKVIDFSLNSLEGQIPVTLSNLLFLEEFLLSDNSIYGEIPSYLGNFSRLKQLELDNNKFSGNIPPVMGQLKELTLFYAWQNQLNGSIPTELSNCDKLEALDLSHNFLTGSIPSALFHLRNLTQLLLISNRLSGQIPADIGSCTSLIRLRLGSNNFTGRIPPEIGHLRSLSFLELSNNLLSGDIPSEIGNCAHLELLDLHSNVLEGTIPSSLKFLVGLNVLDLSANRITGSIPENLGKLKSLNKFILSGNIISGVIPGTLGQCKDLQLLDISNNKITGSIPDEIGHLQGLDILLNLSWNSLSGPIPQTFSNLSKLSILDLSHNKLTGTLTVLVSLDNLVSLNVSYNSFSGSLPDTKFFRDLPSAAFAGNPDLCISKCHTSENGQGFNKSIRNVIVYTFLGVILTSIFVTCGVILALRIHGGNFGRNFDSDEMEWAFTPFQKVNFSIDDILTKLSESNIVGKGCSGIVYRVETPTKQIIAVKKLWPIKKEEPPERDLFTAEVQTLGSIRHKNIVRLLGCCDNGRTRLLLFDYICNGSLFGLLHEKRLFLDWDARYKIILGAAHGLEYLHHDCIPPIVHRDIKANNILVGPQYEAFLADFGLAKLVSSSECSGASHTVAGSYGYIAPEYGYSLRITEKSDVYSFGVVLLEVLTGMEPTDNSIPEGGHIVTWVSNEIREKRREFTSILDQQLVLQSGTKTSEMLQVLGVALLCVNPSPEERPTMKDVTAMLKEIRLESDDFEKPNFLHKGMVVNPKAAVHCSSFSRSCEPLIIESTSSSSS 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02417 1088 ProSiteProfiles Protein kinase domain profile. 763 1043 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02417 1088 PRINTS Leucine-rich repeat signature 408 421 - -
Vimu10g02417 1088 PRINTS Leucine-rich repeat signature 622 635 - -
Vimu10g02417 1088 Pfam Protein kinase domain 765 1035 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02417 1088 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 24 199 - -
Vimu10g02417 1088 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 407 691 - -
Vimu10g02417 1088 ProSiteProfiles Leucine-rich repeat profile. 624 646 IPR001611 GO:0005515
Vimu10g02417 1088 Gene3D Phosphorylase Kinase; domain 1 735 841 - -
Vimu10g02417 1088 ProSiteProfiles Leucine-rich repeat profile. 575 597 IPR001611 GO:0005515
Vimu10g02417 1088 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 739 841 - -
Vimu10g02417 1088 Gene3D Ribonuclease Inhibitor 23 219 IPR032675 -
Vimu10g02417 1088 ProSitePatterns Protein kinases ATP-binding region signature. 769 797 IPR017441 GO:0005524
Vimu10g02417 1088 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 200 325 - -
Vimu10g02417 1088 SUPERFAMILY RNI-like 84 395 - -
Vimu10g02417 1088 Pfam Leucine rich repeat 551 611 IPR001611 GO:0005515
Vimu10g02417 1088 Pfam Leucine rich repeat 94 153 IPR001611 GO:0005515
Vimu10g02417 1088 Pfam Leucine rich repeat N-terminal domain 25 66 IPR013210 -
Vimu10g02417 1088 ProSitePatterns Serine/Threonine protein kinases active-site signature. 885 897 IPR008271 GO:0004672|GO:0006468
Vimu10g02417 1088 Gene3D Ribonuclease Inhibitor 424 695 IPR032675 -
Vimu10g02417 1088 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 549 1033 - -
Vimu10g02417 1088 SMART LRR_typ_2 622 641 IPR003591 -
Vimu10g02417 1088 SMART LRR_typ_2 645 678 IPR003591 -
Vimu10g02417 1088 SMART LRR_typ_2 477 501 IPR003591 -
Vimu10g02417 1088 SMART LRR_typ_2 285 309 IPR003591 -
Vimu10g02417 1088 SMART LRR_typ_2 357 381 IPR003591 -
Vimu10g02417 1088 SMART LRR_typ_2 140 164 IPR003591 -
Vimu10g02417 1088 SMART LRR_typ_2 429 453 IPR003591 -
Vimu10g02417 1088 SMART LRR_typ_2 525 549 IPR003591 -
Vimu10g02417 1088 SMART LRR_typ_2 116 139 IPR003591 -
Vimu10g02417 1088 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 842 1056 - -
Vimu10g02417 1088 SUPERFAMILY Protein kinase-like (PK-like) 759 1059 IPR011009 -
Vimu10g02417 1088 Pfam Leucine Rich Repeat 407 428 IPR001611 GO:0005515
Vimu10g02417 1088 ProSiteProfiles Leucine-rich repeat profile. 407 429 IPR001611 GO:0005515
Vimu10g02417 1088 SUPERFAMILY RNI-like 315 662 - -
Vimu10g02417 1088 Gene3D Transferase(Phosphotransferase) domain 1 842 1056 - -
Vimu10g02417 1088 Gene3D Ribonuclease Inhibitor 220 324 IPR032675 -
Vimu10g02417 1088 Gene3D Ribonuclease Inhibitor 325 423 IPR032675 -
Vimu10g02417 1088 SMART serkin_6 763 1038 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02417 Vimu-Chr10 35095825 35099459 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02417 23 1076 Receptor kinase-like Gene Family AT5G56040 46.771 0.0 921
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu10g02417 Pkinase 8.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02417 - - gmx:100807225 1925.6