Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02396 TTGCTGAGAAAATGGATAGGAGTTGTTACAATGAAAGGGTGTTGGTTAGTGGGGGTGTTGATTGTGTTGTTGGGCAGTGTTGGGGTAGAAGGGTACCCTTCAGAGGATCTGATAGAGAGGTTGCCTGGGCAACCTAATGTTGGGTTCAAGCAATATGCAGGGTATGTGGATGTAGATGTCAAACATGGGAGAAGCCTCTTCTACTATTTTGTGGAGGCTGAGAAAGACCATGAAAAGAAACCCCTTACTCTTTGGCTCAATGGAGGCCCGGGATGTTCCTCCATTGGAGGAGGTGCCTTTACTGAATTGGGTCCCTTTTATCCCAGAGGTGATGGACGTGGTCTTCGAAGAAATTCAATGTCTTGGAATAGAGCATCCAACCTCCTTTTCTTGGAGTCTCCAGCTGGAGTTGGTTGGTCATACTCAAACACAACTTCAGATTACAACGCTGGAGATGCATCCACAGCCAATGATTCGCTTCTCTTCCTGCTGAAATGGTACGAGAAGTTTCCTTCTTACAGATCAAGGGAGCTGTTTCTTACCGGAGAAAGCTATGCAGGACATTATATACCACAGTTAGCCAATGTTCTTTTGGACCACAATGCTCATTCAAATGGTTTCAAATTCAATATTAAAGGAGTAGCTATTGGAAACCCACTTCTGAAACTTGATCGTGATGCACGAGCAACATACGAATACTACTGGTCGCATGGACTGATCTCCGATGAAGTTGGCCTTGCCATTGCGAATGATTGCGATTTCGATGATTATGTCTTCGCCGATACACACAACGTGTCCGCATCATGCAACAATGCAATAAATGAGGCAAATGAGATTGTTAGCGATTACATAAACTACTATGATGTGATTCTGGATGTTTGTTATCCATCCATAGTTGAACAAGAACTGAAATTGAAAAAGATGGCTACTAAAATAAGCATAGGTGTAGATGTATGCATGACTTACGAAAGAGCTTTTTATTTCAATCTCCCAGAGGTTCAGAAGGCTCTCCATGCAAACCGTACTAATCTTCCCTACCACTGGTCCATGTGCAGTGGTGTCTTAAATTATAGCGAGACTGATCCTAATATAGACATCCTCCCAGTTCTCAAAAGGATAGTTCAAAACCATATTCCAGTATGGGTTTTCAGTGGAGACCAAGATTCTGTGGTGCCACTACTAGGTTCTCGAACACTCATTCGTGAACTAGCTCACGAGCTAAAGTTCAAGATTACAGTCCCATATGGAGCATGGTTCCACCGAGGGCAGGTTGGAGGTTGGGTAACAGAGTATGGAAATTTGTTGACTTTTGCAACTGTAAGAGGAGCTGCTCACATGGTACCATTTGCACAGCCTTCAAGAGCACTCCATCTCTTTAGTTCTTTTGTGCATGGAAGGAGATTGCCAAACACTACACGCCCTTCAATTTACGATTAA 1437 0.4342 MLRKWIGVVTMKGCWLVGVLIVLLGSVGVEGYPSEDLIERLPGQPNVGFKQYAGYVDVDVKHGRSLFYYFVEAEKDHEKKPLTLWLNGGPGCSSIGGGAFTELGPFYPRGDGRGLRRNSMSWNRASNLLFLESPAGVGWSYSNTTSDYNAGDASTANDSLLFLLKWYEKFPSYRSRELFLTGESYAGHYIPQLANVLLDHNAHSNGFKFNIKGVAIGNPLLKLDRDARATYEYYWSHGLISDEVGLAIANDCDFDDYVFADTHNVSASCNNAINEANEIVSDYINYYDVILDVCYPSIVEQELKLKKMATKISIGVDVCMTYERAFYFNLPEVQKALHANRTNLPYHWSMCSGVLNYSETDPNIDILPVLKRIVQNHIPVWVFSGDQDSVVPLLGSRTLIRELAHELKFKITVPYGAWFHRGQVGGWVTEYGNLLTFATVRGAAHMVPFAQPSRALHLFSSFVHGRRLPNTTRPSIYD 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02396 478 Gene3D - 319 355 - -
Vimu10g02396 478 Pfam Serine carboxypeptidase 43 465 IPR001563 GO:0004185|GO:0006508
Vimu10g02396 478 Gene3D alpha/beta hydrolase 33 295 IPR029058 -
Vimu10g02396 478 FunFam Carboxypeptidase 32 296 - -
Vimu10g02396 478 SUPERFAMILY alpha/beta-Hydrolases 30 472 IPR029058 -
Vimu10g02396 478 ProSitePatterns Serine carboxypeptidases, serine active site. 180 187 IPR018202 GO:0004185
Vimu10g02396 478 FunFam Carboxypeptidase 366 465 - -
Vimu10g02396 478 Gene3D - 366 465 - -
Vimu10g02396 478 PRINTS Carboxypeptidase C serine protease (S10) family signature 435 448 IPR001563 GO:0004185|GO:0006508
Vimu10g02396 478 PRINTS Carboxypeptidase C serine protease (S10) family signature 166 191 IPR001563 GO:0004185|GO:0006508
Vimu10g02396 478 PRINTS Carboxypeptidase C serine protease (S10) family signature 118 130 IPR001563 GO:0004185|GO:0006508
Vimu10g02396 478 PRINTS Carboxypeptidase C serine protease (S10) family signature 131 141 IPR001563 GO:0004185|GO:0006508
Vimu10g02396 478 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 38 452 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02396 Vimu-Chr10 34910462 34913449 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02396 326 468 Calmodulin-binding Proteins AT2G22960 24.658 6.11e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02396 K16297 - gmx:100815723 860.907