Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02394 ATGTCGAGCACAGCTGGTCAGGTCATCAAATGCAAAGGGAAGCCACTGGTGATTGAGGAAGTAGAGGTGGCACCACCAGAGGCTGGTGAAGTGCGTTTGAAGATCCTCTACACCTCTCTTTGCCACACTGACGTTTACTTCTGGGAAGCCAAGGGCCAAACTCCATTGTTTCCTCGCATATTTGGTCATGAGGCTGGAGGGATTGTGGAGAGCGTAGGTGAGGGTGTGACTCATCTGAAACCAGGGGATCATGCTCTTCCTGTGTTTACAGGGGAGTGTGGAGAATGTGCGCATTGTAAGTCAGAGGAGAGCAACATGTGTGATCTGCTGAGGATCAACACTGATCGTGGTGTCATGATCCATGATAGTCAAACAAGATTTTCTATAAAGGGACAACCTATTTACCATTTTGTCGGTACCTCTACATTCAGTGAATACACTGTGGTTCATGCTGGATGTGTTGCCAAAGTCAACCCTGCTGCTCCACTTGACAAAATTTGTGTTCTCAGTTGTGGAATATGCACAGGTTTGGAAAATCCCGGCCTTGACATAGTCCGTAACAATAATGTTAGTCTTGGGGCTACTGTCAATGTTGCAAAACCAAAACCTGGTTCGTCTGTTGCCATTTTTGGACTTGGAGCTGTTGGCCTTGCTGCTGCTGAAGGGGCAAGGATTTCCGGTGCATCAAGAATCATTGGGGTTGATTTAGTTTCAAGCCGATTTGAAGAAGCTAAGAAGTTTGGGGTCAATGAATTTGTGAACCCAAAAGACCATGACAAACCCGTACAACAGGTAATTGCTGAAATGACAAATGGGGGAGTGGATCGTGCTGTTGAATGCACTGGCAGCATCCAGGCCATGGTGTCAGCATTCGAATGTGTTCACGATGGTTGGGGTGTTGCTGTACTTGTTGGAGTGCCAAACAAAGATGATGCATTCAAAACTCATCCAGTGAATTTTTTGAACGAGAGGACTCTTAAGGGTACCTTTTATGGTAACTACAAACCTCGCACTGATCTTCCTTCAGTTGTGGAGAAGTACATGAATGGGGAATTGGAACTGGAGAAATTCATCACTCACACCGTTCCATTCTCAGAAATTAACAAAGCTTTTGATTACATGCTGAAAGGGGAGTCCATCAGATGCATTATCCGTATGGGAGAGTAG 1167 0.4567 MSSTAGQVIKCKGKPLVIEEVEVAPPEAGEVRLKILYTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTHLKPGDHALPVFTGECGECAHCKSEESNMCDLLRINTDRGVMIHDSQTRFSIKGQPIYHFVGTSTFSEYTVVHAGCVAKVNPAAPLDKICVLSCGICTGLENPGLDIVRNNNVSLGATVNVAKPKPGSSVAIFGLGAVGLAAAEGARISGASRIIGVDLVSSRFEEAKKFGVNEFVNPKDHDKPVQQVIAEMTNGGVDRAVECTGSIQAMVSAFECVHDGWGVAVLVGVPNKDDAFKTHPVNFLNERTLKGTFYGNYKPRTDLPSVVEKYMNGELELEKFITHTVPFSEINKAFDYMLKGESIRCIIRMGE 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02394 388 Pfam Zinc-binding dehydrogenase 214 338 IPR013149 -
Vimu10g02394 388 FunFam alcohol dehydrogenase 1-like isoform X1 12 175 - -
Vimu10g02394 388 Gene3D - 176 329 - -
Vimu10g02394 388 FunFam Alcohol dehydrogenase class-P 191 329 - -
Vimu10g02394 388 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 191 351 IPR036291 -
Vimu10g02394 388 Gene3D - 13 378 - -
Vimu10g02394 388 CDD alcohol_DH_plants 9 385 - -
Vimu10g02394 388 SUPERFAMILY GroES-like 4 179 IPR011032 -
Vimu10g02394 388 PANTHER ALCOHOL DEHYDROGENASE 7 384 - -
Vimu10g02394 388 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 62 76 IPR002328 GO:0008270|GO:0016491
Vimu10g02394 388 Pfam Alcohol dehydrogenase GroES-like domain 29 156 IPR013154 -
Vimu10g02394 388 SUPERFAMILY GroES-like 336 385 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02394 Vimu-Chr10 34894137 34897239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02394 30 378 Monolignol Biosynthesis Gene Families AT1G72680 24.859 3.69e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02394 K18857 - gmx:100783858 720.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02394 10 34894137 34897239 Vimu10g02394 10 34894137 34897239 ECH
Vimu1g02412 1 34942706 34945622 Vimu10g02394 10 34894137 34897239 PCT