Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02364 ATGTCATTAGTTAGGTCTGCTGATGTAGCTCCCACATCGTATAAAAATGCCAAGTTCTTCTCATTAAATGGAACTGATGTTAGACCAGGCTTGTCCTCTCAAATTTTTGGTCCTGATAAGCATAGGAACATGTACATGACAGATTCTTACTCCAGCGAGAGTTATGAGAAGTACTTCCATGACTCTCAAACAGAGGAACTGATAGAACCATCTAACTCCAGCATCTCTCGAAGTTCAATCCCCCCTGATGTAGCCTCTTCTTACCAGCTTACGGCCAGTTCAGAAGCTTCTGTGGTTGCCAATAACCCATTTGATTGTTCTTTCATGTCCACAGTGACACACGATGTTTATGAGGCAAACTATGGATCAGATTTGATGGAGAATGCAAGCCTCGATTACCGTGCAAATGATGGTCTAATGAGTTTAAAACTACAAGCATTGGAGAGGGCATTGCTTGATGACAGTGAGGCTGAGGAGGAGGAGCTTGAAGAGGAAGACATATTTGAGGCTGTTCAAAGCATGGAAATTGATCCAGACATTGCTGAGTGGTCTGATTCCATGCAGAATATGGTCCTCCATGATTCACCAAAGGAGTACTCTTCTTCAGATTCCAGCATCAGCAGCATCATCAGCAGCACCAAAGAAATATCACAAATTTCTCAGACCCCAAAGCAGCTACTTTATGAATGTGCTATTGCACTTTCAGAAGGAAACGAAAAGGAAGGATCGTCCATGATAAACAATCTCAGACAGATGGTGTCAATTCAAGGAGAGCCTTCTCAAAGAATTGCAGCCTATATGGTTGAGGGGCTAGCAGCTCGCCTAGCCGAATCCGGCAAAAGTATTTACAAAGCTCTGAGATGCAAGGAACCACCTTCTTCAGATCGTCTAGCAGCCATGCAGATACTGTTTGAGGTTTGCCCATGTTTCAAATTTGGATTTCTTGCTGCTAACAATGCTATTACAGAAGCAGTGAAAGATGACATGAACATTCATATCATAGACTTTGACATCAACCAAGGAAGTCAGTACATTAATCTAATCCAAACACTTGCTTCAAGGTCAAGTAAGCCACCCCATGTTAGATTGACTGGGGTTGATGATCCTGAGTCTGTGCAGCGATCTGTTGGAGGCCTAAAGAACATAGGACAAAGACTAGAAAAACTGGCAGAGGCACTCGGTCTGCCATTTGAGTTCCGAGCAGTGGCATCAAGGACTTCCATTGTCACCCCATCAATGCTCAACTGTAGTCCCGGGGAAGCACTTGTGGTGAACTTTGCATTCCAGCTTCATCACATGCCTGATGAGAGTGTTTCAACAGTAAACGAACGGGACCAACTTCTTCGTTTGGTGAAGAGCTTGAATCCAAAGCTTGTGACAGTTGTGGAGCAAGATGTGAACACAAACACCACCCCCTTCTTGCCTAGATTTGTTGAAGCCTACAATTACTACTCTGCTGTGTTTGAGTCACTTGATGTTACTCTTCCAAGAGAAAGCCAGGACAGGATGAATGTTGAAAGGCAATGCTTGGCCAGAGACATTGTCAATGTTGTTGCATGTGAGGGCGAGGATAGGATAGAACGATATGAAGTGGCAGGAAAATGGAGAGCAAGGATCACAATGGCTGGCTTCACTTCATCTCCAATGAGCACAAATGTGACTGATGAAATCAGAAACCTCATTAAGGTGATGTATTGTGACAGGTACAAGATTAAGGAGGAAATGGGTGCACTTCACTTTGGTTGGGAAGACAAAAACTTGATCGTTGCTTCGGCATGGAAGTTACCAAGATAA 1794 0.437 MSLVRSADVAPTSYKNAKFFSLNGTDVRPGLSSQIFGPDKHRNMYMTDSYSSESYEKYFHDSQTEELIEPSNSSISRSSIPPDVASSYQLTASSEASVVANNPFDCSFMSTVTHDVYEANYGSDLMENASLDYRANDGLMSLKLQALERALLDDSEAEEEELEEEDIFEAVQSMEIDPDIAEWSDSMQNMVLHDSPKEYSSSDSSISSIISSTKEISQISQTPKQLLYECAIALSEGNEKEGSSMINNLRQMVSIQGEPSQRIAAYMVEGLAARLAESGKSIYKALRCKEPPSSDRLAAMQILFEVCPCFKFGFLAANNAITEAVKDDMNIHIIDFDINQGSQYINLIQTLASRSSKPPHVRLTGVDDPESVQRSVGGLKNIGQRLEKLAEALGLPFEFRAVASRTSIVTPSMLNCSPGEALVVNFAFQLHHMPDESVSTVNERDQLLRLVKSLNPKLVTVVEQDVNTNTTPFLPRFVEAYNYYSAVFESLDVTLPRESQDRMNVERQCLARDIVNVVACEGEDRIERYEVAGKWRARITMAGFTSSPMSTNVTDEIRNLIKVMYCDRYKIKEEMGALHFGWEDKNLIVASAWKLPR 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02364 597 Coils Coil 145 165 - -
Vimu10g02364 597 Pfam GRAS domain family 224 594 IPR005202 -
Vimu10g02364 597 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 192 589 IPR005202 -
Vimu10g02364 597 ProSiteProfiles GRAS family profile. 214 594 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02364 Vimu-Chr10 34483929 34487736 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02364 1 594 GRAS Transcription Factor Family AT1G21450 60.267 0.0 691
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vimu10g02364 GRAS 3.1e-136 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02364 - - gmx:100788103 1009.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02364 10 34483929 34487736 Vimu10g02364 10 34483929 34487736 ECH
Vimu1g02405 1 34826156 34830654 Vimu10g02364 10 34483929 34487736 PCT