Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02363 ATGGACGATTCTTCACCAGGTGATGACCCTAAGACTTGTCCCCGAGGCCACTGGAGACCTGCTGAGGATGAAAAGCTTAGACAACTTGTTGAACAATACGGTGCTCAAAACTGGAATTCAATTGCTGAGAAGCTCCAAGGAAGATCAGGGAAAAGTTGCAGATTAAGGTGGTTCAATCAGCTTGACCCAAGAATCAACAGAAGACCGTTCACGGAAGAGGAAGAAGAGAGGTTACTCGCAGCTCATCGAATTCACGGGAACAAGTGGGCTCTCATAGCGAGGCTTTTCCCTGGTCGAACTGATAATGCTGTGAAGAACCACTGGCACGTTATAATGGCGAGAAAGCAAAGGGAACAATCCAAGTTATGTGGGAAAAGAAGTTTCCAAGATGTTTACAACGATTCCAACACGTTCATCGAGAAGAGAACACCACACTCTCATCAAGACCTTTTGTTTGGTACGAGATTTGGGTTGGAGAATGGAAGATTCTTTGACTTTCGGAACCTCGATAATAATAAGGATAATAACAATAATACGACTGCTAATAATAGGATAGTTGCAGATGCTATTCCCTCTAGTTCTCTGGCGTCTTGGAATTTTGCTTCTGTGCCAACCACCATAAACGGTTCTACTGTAGTGGATAGAAAAGGAGGGAGAGAATATTTCAACAGTTCTTCTTGCTCTTCTAGTGTTTATCTCTCAGAATGTTCCAGAAACTCAGATAGATCGTTTCTTTACAGAATTTATCCAAATCCTGCATTCTCTCTTCCCAACTACAAGAGGGTCGTTCCAACAAGTCCTTTTAGTTTCCTTGATTCTGATAATGATGGAAGGATAAAGAGAAACTTTTTGATGAGTTTTTGCGATAACAACTCATCCACATTCACCAAGTTGAAGGCTTCCACAGAGAAAGAACACCAACAACAAACACCTGAAGATGAGACCAATATCGAACCCAAAGAAGTTCCTTTCATTGATTTTCTTGGTGTGGGTGTCTCTTCATCATAA 1008 0.4177 MDDSSPGDDPKTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRSFQDVYNDSNTFIEKRTPHSHQDLLFGTRFGLENGRFFDFRNLDNNKDNNNNTTANNRIVADAIPSSSLASWNFASVPTTINGSTVVDRKGGREYFNSSSCSSSVYLSECSRNSDRSFLYRIYPNPAFSLPNYKRVVPTSPFSFLDSDNDGRIKRNFLMSFCDNNSSTFTKLKASTEKEHQQQTPEDETNIEPKEVPFIDFLGVGVSSS 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02363 335 Gene3D - 69 146 - -
Vimu10g02363 335 CDD SANT 18 59 IPR001005 -
Vimu10g02363 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 61 IPR017930 -
Vimu10g02363 335 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vimu10g02363 335 SMART sant 14 63 IPR001005 -
Vimu10g02363 335 SMART sant 66 114 IPR001005 -
Vimu10g02363 335 FunFam MYB transcription factor 68 138 - -
Vimu10g02363 335 ProSiteProfiles Myb-like domain profile. 15 61 IPR001005 -
Vimu10g02363 335 MobiDBLite consensus disorder prediction 1 21 - -
Vimu10g02363 335 MobiDBLite consensus disorder prediction 301 320 - -
Vimu10g02363 335 FunFam MYB transcription factor 15 66 - -
Vimu10g02363 335 Gene3D - 15 66 - -
Vimu10g02363 335 PANTHER MYB PROTEIN-RELATED 15 240 - -
Vimu10g02363 335 SUPERFAMILY Homeodomain-like 14 108 IPR009057 -
Vimu10g02363 335 CDD SANT 78 109 IPR001005 -
Vimu10g02363 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vimu10g02363 335 Pfam Myb-like DNA-binding domain 18 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02363 Vimu-Chr10 34451734 34453049 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02363 13 122 MYB Transcription Factor Family AT1G17950 84.545 6.27e-67 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu10g02363 Myb_DNA-bind_6 2.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02363 K09422 - gmx:100817328 498.819